Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,176,531 – 12,176,631 |
Length | 100 |
Max. P | 0.500000 |
Location | 12,176,531 – 12,176,631 |
---|---|
Length | 100 |
Sequences | 3 |
Columns | 116 |
Reading direction | reverse |
Mean pairwise identity | 81.33 |
Mean single sequence MFE | -10.83 |
Consensus MFE | -8.80 |
Energy contribution | -8.80 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.26 |
Structure conservation index | 0.81 |
SVM decision value | -0.06 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12176531 100 - 22224390 UAAUUACAUUUUACGUGUUCCUAUUAAUCUUGCUGAGUUUUUAGUUUCAGUUUUAGUUUUGCCCACUAAUUCACUUGCCU----------------UCCAUCCCUUUUACUCCAUU ..............(((..(..(((((....((((((........)))))).)))))...)..)))..............----------------.................... ( -9.60) >DroEre_CAF1 3574 100 - 1 UAAUUACAUUUUACGUGUUCCUAUUAAUCUUGCUGAGUUUUUAGUUUCAGUUUUAGUUUUGCCCACUAAUUCACUUGCCU----------------UCCAUCCCUUUUACUCCCUU ..............(((..(..(((((....((((((........)))))).)))))...)..)))..............----------------.................... ( -9.60) >DroAna_CAF1 12359 114 - 1 UAAUUACAUUUUACGUGUUCCUAUUAAUCUUGCUGAGUUUUUAGUUUCAGUUUUAGUUUUUCCCACUAAUUCACUUCACAGACACACACACUGGCACACACAUCCUUUACCCGC-- ..............((((.((..........((((((........)))))).(((((.......))))).......................)).))))...............-- ( -13.30) >consensus UAAUUACAUUUUACGUGUUCCUAUUAAUCUUGCUGAGUUUUUAGUUUCAGUUUUAGUUUUGCCCACUAAUUCACUUGCCU________________UCCAUCCCUUUUACUCCCUU ..............(((.....(((((....((((((........)))))).)))))......))).................................................. ( -8.80 = -8.80 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:17 2006