Locus 4656

Sequence ID X_DroMel_CAF1
Location 12,175,255 – 12,175,370
Length 115
Max. P 0.515017
window7643

overview

Window 3

Location 12,175,255 – 12,175,370
Length 115
Sequences 3
Columns 115
Reading direction forward
Mean pairwise identity 86.34
Mean single sequence MFE -38.33
Consensus MFE -31.10
Energy contribution -32.33
Covariance contribution 1.23
Combinations/Pair 1.07
Mean z-score -1.66
Structure conservation index 0.81
SVM decision value -0.04
SVM RNA-class probability 0.515017
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12175255 115 + 22224390
AUGUCCUCGAGCCCGAAUGGCGGAGCACAGGCUGAAGGAUCGGGUUCCUGGACAGCCGAGAAAGAGUCGCCACAUAGACGGAGAGAGCGAGAUGGAGGGCGAUAGGAUACAUCAA
.((((((...((((...((((((..(...(((((.((((......))))...)))))......)..))))))(((...((.......))..)))..))))...))))))...... ( -40.00)
>DroSim_CAF1 6416 114 + 1
AUGUCCUCGAGCCCGAAUGGCGGAGCAC-GGCUGAAGGAUCGGGUUCCUGGACAGCCGAGAAAGAGUCGCCACAUGGCCGGAGAGAGCGAGAUGGAGGGCGAUGGGAUACAUCAA
..((((((..(((....((((((..(.(-(((((.((((......))))...)))))).)......))))))...)))((.......)).....))))))((((.....)))).. ( -42.60)
>DroEre_CAF1 1542 101 + 1
AUGUCCUGGAGCCCGAAUGGCGGAGCA--GGUUGAAGGAUCGGCUUCCUGGACAG----GA-------ACCACAUGG-CGGAGAGAACGGGAUGGAGGGCGAUAGGAUACAUUAA
.(((((((..((((.......((..(.--.(((..((((......)))).)))..----).-------.)).(((..-((.......))..)))..))))..)))))))...... ( -32.40)
>consensus
AUGUCCUCGAGCCCGAAUGGCGGAGCAC_GGCUGAAGGAUCGGGUUCCUGGACAGCCGAGAAAGAGUCGCCACAUGG_CGGAGAGAGCGAGAUGGAGGGCGAUAGGAUACAUCAA
.((((((...((((...((((((......(((((.((((......))))...))))).........))))))(((...((.......))..)))..))))...))))))...... (-31.10 = -32.33 +   1.23)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:16 2006