Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,173,171 – 12,173,270 |
Length | 99 |
Max. P | 0.541998 |
Location | 12,173,171 – 12,173,270 |
---|---|
Length | 99 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 66.76 |
Mean single sequence MFE | -35.66 |
Consensus MFE | -12.30 |
Energy contribution | -12.42 |
Covariance contribution | 0.12 |
Combinations/Pair | 1.17 |
Mean z-score | -1.82 |
Structure conservation index | 0.34 |
SVM decision value | 0.02 |
SVM RNA-class probability | 0.541998 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12173171 99 - 22224390 GGUAUCUGGGCCUUGGGAAAGUAGAGGUAGAGGU-------CGUG------UGCAUAUGACAAAAGCAUCUGCCUUUUGUUUGCUUGGCGCGCCCUUGGCUUU--------UUCCUUCUC (((......)))..(((((.(.((((((.((((.-------((((------((((...(((((((((....).)))))))))))...))))).)))).)))))--------).).))))) ( -31.20) >DroVir_CAF1 32963 99 - 1 ------GGUGAGUUG-AGGGGG------AGAGGGGGUUUGGUGUACUGUGGUGCAUUGGACAAAGGCAGCUGCAUUUGGUUUGAAUAGCGCGCCCUUGGCACC--------CACCUCCCA ------.........-...(((------((..((((((..((((((....))))))..)))...(((.((.((((((.....)))).))))))).......))--------)..))))). ( -39.50) >DroGri_CAF1 34706 94 - 1 ------GGGGCGUGGCAGGGGC------AGAGG--------CGUA------GGCAUGUGACAAAAGCAGCUGCCUUUUGUUUGACUAGCGCGCCCUUGGCCCCACUUACCGCACCACACC ------..((.((((..(((((------.((((--------(((.------.((..(((((((((((....).))))))))..))..))))).)))).))))).....)))).))..... ( -35.60) >DroEre_CAF1 23756 93 - 1 GGCAUCUGGGCCUUGGAGAAGU------UGAGGU-------CGUG------UGCAUAUGACAAAAGCAUCUGCCUUUUGUUUGGCUGGCGCGCCCUUGGCUUU--------UUCCUGCCC .......((((...((((((((------..(((.-------((((------(((....(((((((((....).))))))))..))..))))).)))..)))))--------)))..)))) ( -39.00) >DroYak_CAF1 24310 93 - 1 GGCAUCUGGGCCUUGGAAAAGU------UGAGGU-------CGUG------UGCAUAUGACAAAAGCAUCUGCCUUUUGUUUGGUUGGUGCGCCCUUGGCUUU--------UUCCUUCCC (((......)))..((((((((------..((((-------((((------....))))))....(((((.(((........))).)))))...))..)))))--------)))...... ( -33.00) >consensus GG_AUCUGGGCCUUGGAGAAGU______AGAGGU_______CGUG______UGCAUAUGACAAAAGCAUCUGCCUUUUGUUUGACUGGCGCGCCCUUGGCUUU________UUCCUCCCC .............................((((...................((....(((((((((....)).)))))))......))..(((...))).............))))... (-12.30 = -12.42 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:15 2006