Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,165,995 – 12,166,089 |
Length | 94 |
Max. P | 0.890345 |
Location | 12,165,995 – 12,166,089 |
---|---|
Length | 94 |
Sequences | 3 |
Columns | 95 |
Reading direction | reverse |
Mean pairwise identity | 95.42 |
Mean single sequence MFE | -23.47 |
Consensus MFE | -21.45 |
Energy contribution | -21.23 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.05 |
Mean z-score | -2.32 |
Structure conservation index | 0.91 |
SVM decision value | 0.96 |
SVM RNA-class probability | 0.890345 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12165995 94 - 22224390 UUUUCAAAGCUGACACUGUGCAAAGCAAACGAGAGAAAGCUUUCGCUAAGCAAAAAUCUCCCACAACCCC-AAAACCGGUUGUCUAGUGUAGUGA .............(((((..(...((...((((((....))))))....))...........((((((..-......))))))...)..))))). ( -22.80) >DroEre_CAF1 18403 93 - 1 UUUUCAAAGCUGACACUGUGCAAAGCAAACGAGAGAUAGCUUUCGCUAAGCAAAAAUCUCCCACAACCC--AAAACCGGUUGUCUAGUGUAGUGA .............(((((..(.........(.(((((.((((.....))))....))))).)((((((.--......))))))...)..))))). ( -22.70) >DroYak_CAF1 18909 94 - 1 UUUUCA-AGCUGACACUGCGCAAAGCAAACGAGAGACAGCUUUCGCAAAGCAAAAAUCUCCCACAACCCCAAAAACCGGUUGUCUAGUGUAGUGA ......-......((((((((...((...((((((....))))))....))...........((((((.........))))))...)))))))). ( -24.90) >consensus UUUUCAAAGCUGACACUGUGCAAAGCAAACGAGAGAAAGCUUUCGCUAAGCAAAAAUCUCCCACAACCCC_AAAACCGGUUGUCUAGUGUAGUGA .............((((((((...((...((((((....))))))....))...........((((((.........))))))...)))))))). (-21.45 = -21.23 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:12 2006