Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,158,287 – 12,158,377 |
Length | 90 |
Max. P | 0.889045 |
Location | 12,158,287 – 12,158,377 |
---|---|
Length | 90 |
Sequences | 5 |
Columns | 90 |
Reading direction | forward |
Mean pairwise identity | 95.78 |
Mean single sequence MFE | -21.62 |
Consensus MFE | -20.02 |
Energy contribution | -19.86 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.11 |
Mean z-score | -1.15 |
Structure conservation index | 0.93 |
SVM decision value | 0.17 |
SVM RNA-class probability | 0.617616 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12158287 90 + 22224390 CCGCCAAGGAAAAACGUAAAUAAGCUUCAUUAGCAGCUCGCAAGCUUAAGUGGCCUUUUUCCCCGGCGAGCAUAUGAAAAAUUAUUGCAU .((((..(((((((.((...(((((((.....((.....)))))))))....)).)))))))..)))).(((.((((....))))))).. ( -24.80) >DroSec_CAF1 11558 90 + 1 CGGCCAAAGAAAAACGUAAAUAAGCUUCAUUAGCAGCUCGCAAGCUUAAGUGGCCUUUUUCCCCGGCGAGCAUGUGAAAAAUUAUUGCAU ..(((...((((((.((...(((((((.....((.....)))))))))....)).))))))...)))..(((.((((....))))))).. ( -18.90) >DroSim_CAF1 18400 90 + 1 CGGCCAAGGAAAAACGUAAAUAAGCUUCAUUAGCAGCUCGCAAGCUUAAGUGGCCUUUUUCCCCGGCGAGCAUGUGAAAAAUUAUUGCAU ..(((..(((((((.((...(((((((.....((.....)))))))))....)).)))))))..)))..(((.((((....))))))).. ( -22.70) >DroEre_CAF1 10970 90 + 1 CGGUCAAGGAAAAACGUAAAUAAGCUUCAUUAGCAGCUCGCAAGCUUAAGUGGCCUUUUUCCCCGGCGAGUAUGUGAAAAAUUAUUGCAU (((....(((((((.((...(((((((.....((.....)))))))))....)).))))))))))((((.....(....)....)))).. ( -19.60) >DroYak_CAF1 11491 90 + 1 AGGCCACGGAAAAACGUAAAUAAGCUUAAUUAGCAGCUCGCAAGCUUAAGUGGCCUUUUUCCCCGGCGAGUAUGUGAAAAAUGAUUGCAU ((((((((......).....(((((((.....((.....))))))))).))))))).........((((.(((.......))).)))).. ( -22.10) >consensus CGGCCAAGGAAAAACGUAAAUAAGCUUCAUUAGCAGCUCGCAAGCUUAAGUGGCCUUUUUCCCCGGCGAGCAUGUGAAAAAUUAUUGCAU ..(((..(((((((.((...(((((((.....((.....)))))))))....)).)))))))..)))..(((.((((....))))))).. (-20.02 = -19.86 + -0.16)
Location | 12,158,287 – 12,158,377 |
---|---|
Length | 90 |
Sequences | 5 |
Columns | 90 |
Reading direction | reverse |
Mean pairwise identity | 95.78 |
Mean single sequence MFE | -22.89 |
Consensus MFE | -21.82 |
Energy contribution | -22.06 |
Covariance contribution | 0.24 |
Combinations/Pair | 1.05 |
Mean z-score | -1.30 |
Structure conservation index | 0.95 |
SVM decision value | 0.95 |
SVM RNA-class probability | 0.889045 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12158287 90 - 22224390 AUGCAAUAAUUUUUCAUAUGCUCGCCGGGGAAAAAGGCCACUUAAGCUUGCGAGCUGCUAAUGAAGCUUAUUUACGUUUUUCCUUGGCGG ..(((.............))).(((((((((((((.(.....(((((((((.....)).....)))))))....).))))))))))))). ( -27.22) >DroSec_CAF1 11558 90 - 1 AUGCAAUAAUUUUUCACAUGCUCGCCGGGGAAAAAGGCCACUUAAGCUUGCGAGCUGCUAAUGAAGCUUAUUUACGUUUUUCUUUGGCCG ..(((.............)))..((((((((((((.(.....(((((((((.....)).....)))))))....).)))))))))))).. ( -21.72) >DroSim_CAF1 18400 90 - 1 AUGCAAUAAUUUUUCACAUGCUCGCCGGGGAAAAAGGCCACUUAAGCUUGCGAGCUGCUAAUGAAGCUUAUUUACGUUUUUCCUUGGCCG ..(((.............)))..((((((((((((.(.....(((((((((.....)).....)))))))....).)))))))))))).. ( -24.52) >DroEre_CAF1 10970 90 - 1 AUGCAAUAAUUUUUCACAUACUCGCCGGGGAAAAAGGCCACUUAAGCUUGCGAGCUGCUAAUGAAGCUUAUUUACGUUUUUCCUUGACCG .........................((((((((((.(.....(((((((((.....)).....)))))))....).)))))))))).... ( -17.90) >DroYak_CAF1 11491 90 - 1 AUGCAAUCAUUUUUCACAUACUCGCCGGGGAAAAAGGCCACUUAAGCUUGCGAGCUGCUAAUUAAGCUUAUUUACGUUUUUCCGUGGCCU .......................((((.(((((((.(.....((((((((..((...))...))))))))....).))))))).)))).. ( -23.10) >consensus AUGCAAUAAUUUUUCACAUGCUCGCCGGGGAAAAAGGCCACUUAAGCUUGCGAGCUGCUAAUGAAGCUUAUUUACGUUUUUCCUUGGCCG .......................((((((((((((.(.....(((((((((.....)).....)))))))....).)))))))))))).. (-21.82 = -22.06 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:11 2006