Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,156,333 – 12,156,424 |
Length | 91 |
Max. P | 0.960514 |
Location | 12,156,333 – 12,156,424 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 101 |
Reading direction | forward |
Mean pairwise identity | 72.45 |
Mean single sequence MFE | -28.23 |
Consensus MFE | -20.36 |
Energy contribution | -20.33 |
Covariance contribution | -0.03 |
Combinations/Pair | 1.22 |
Mean z-score | -1.48 |
Structure conservation index | 0.72 |
SVM decision value | 1.51 |
SVM RNA-class probability | 0.960514 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12156333 91 + 22224390 GAUUCCAGGCCAUAUCCGCCAUUGCGGUGGCGCAGGAUGGAGUCAUCAAUGUGGCCGAUCAAGGUGAGUUCAGCACAUUUAAA-----AGGAAUAU----- .(((((.((((((((.((((((....))))))...((((....)))).))))))))......(.((....)).).........-----.)))))..----- ( -31.10) >DroSec_CAF1 9637 91 + 1 GAUUCCAGGCCAUAUCCGCCAUUGCGGUGGCGCAAGAUGGAGUCAUCAAUGUGGCCGAUCAAGGUAAGUGCCUUCUAUAAUUU-----AUAACAAU----- ((((...((((((((.((((((....))))))...((((....)))).))))))))))))(((((....))))).........-----........----- ( -28.70) >DroWil_CAF1 11328 91 + 1 GCUUCCAGGCCAUAUCGGCCAUAGCUGUGGCUCAGGAUGGUGUCAUCAAUGUGGCUGAUCAAGGUGAGUGUAAAACGAAAUCA-----AAUGAGCU----- ((((....(((..((((((((((...(((((.(......).)))))...))))))))))...)))..((.....)).......-----...)))).----- ( -26.20) >DroYak_CAF1 9493 96 + 1 GAUUCCAGGCCAUAUCCGCCAUCGCGGUGGCGCAGGAUGGAGUCAUCAAUGUGGCUGAUCAAGGUGAGUUCCGUUCAUUUACU-----ACAAAUUUUAUAA (((((((..((.....((((((....))))))..)).)))))))...((((..(((.((....)).)))..))))........-----............. ( -28.00) >DroMoj_CAF1 16997 85 + 1 GCUUCCAGGCCAUCUCGGCCAUCGCAGUGGCCCAGGACGGUGUCAUCAAUGUGGCCGAUCAAGGUGAGUACAGCAA--------CUGAAUUA------U-- (((.....((((((((((((((....(((((((.....)).)))))....))))))))....)))).))..)))..--------........------.-- ( -26.90) >DroPer_CAF1 21518 95 + 1 GCUUCCAGGCUAUCUCGGCCAUUGCCGUGGCCCAGGACGGCGUCAUCAAUGUGGCAGAUCAAGGUGAGUGGAUUUUAAAUGAUACUUAUCAAAU-U----- ((((((.(((((...((((....)))))))))..))).)))(((((....))))).......((((((((............))))))))....-.----- ( -28.50) >consensus GAUUCCAGGCCAUAUCCGCCAUUGCGGUGGCGCAGGAUGGAGUCAUCAAUGUGGCCGAUCAAGGUGAGUGCAGUACAUAUAAU_____ACAAAU_U_____ .......((((((((.((((((....))))))...((((....)))).))))))))............................................. (-20.36 = -20.33 + -0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:10 2006