Locus 4649

Sequence ID X_DroMel_CAF1
Location 12,154,540 – 12,154,649
Length 109
Max. P 0.989053
window7634

overview

Window 4

Location 12,154,540 – 12,154,649
Length 109
Sequences 6
Columns 112
Reading direction forward
Mean pairwise identity 76.09
Mean single sequence MFE -26.78
Consensus MFE -16.42
Energy contribution -16.70
Covariance contribution 0.28
Combinations/Pair 1.04
Mean z-score -2.55
Structure conservation index 0.61
SVM decision value 2.15
SVM RNA-class probability 0.989053
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12154540 109 + 22224390
AACGGUGACCAAAAAUUAAUUGGAAUUCUCACAUUGGGGAAUUUCAUUGUCUGAUUUUUCAUUGCCCCAGUACACAACAUAUAU-GUACAUACGUAUGUGCGAUUG--UAUG
...((..(..((((((((..((((((((((......)))))))))).....))))))))..)..))...(((((...(((((((-((....)))))))))....))--))). ( -29.10)
>DroPse_CAF1 21527 83 + 1
AACGGUGACCAGAAAUUAAUUGGAAUUCUCACAUUGGGGAAUUUCAUUGUCUGAUUUUUCAUGGGCUCUUCAUGUACUAUACA-----------------------------
...((((..((((.......((((((((((......))))))))))...))))......(((((.....))))))))).....----------------------------- ( -17.30)
>DroSim_CAF1 9762 101 + 1
AACGGUGACCAAAAAUUAAUUGGAAUUCUCACAUUGGGGAAUUUCAUUGUCUGAUUUUUCAUUGCCCCAGUACACAACAUAU---------ACGUAUGUGUGACUG--UGUG
...((..(..((((((((..((((((((((......)))))))))).....))))))))..)..)).((((.((((.((((.---------...))))))))))))--.... ( -28.40)
>DroEre_CAF1 7315 111 + 1
AACGGUGACCAGAAAUUAAUUGGAAUUCUCACAUUUGGGAAUUUCAUUGUCUGAUUUUUCAUUGCCCCAGCACACAACAUACAC-ACACACACACAUGUGUGACUGUGUGUG
...((..(..((((((((..(((((((((((....))))))))))).....))))))))..)..))...........(((((((-(..(((((....)))))..)))))))) ( -35.00)
>DroYak_CAF1 7695 110 + 1
AACGGUGACCAGAAAUUAAUUGGAAUUCUCACAUUGGGGAAUUUCAUUGUCUGAUUUUUCAUUGCCCCAGUACACAACAUAC-C-AUACAUGUACAUAUGCAUGUGUGCGUG
...((..(..((((((((..((((((((((......)))))))))).....))))))))..)..)).............(((-(-(((((((((....)))))))))).))) ( -30.80)
>DroAna_CAF1 6917 97 + 1
AACGGUGACCAGAAAUUAAUUGGAAUUCUCACAUUGGGGAAUUUCAUUGUCUGAUUUUUCAUGGCCCCCUCCCAGUAUAUACCCCCUAU--AUGUAU-------------UA
...(((.(..((((((((..((((((((((......)))))))))).....))))))))..).))).......((((((((.......)--))))))-------------). ( -20.10)
>consensus
AACGGUGACCAGAAAUUAAUUGGAAUUCUCACAUUGGGGAAUUUCAUUGUCUGAUUUUUCAUUGCCCCAGCACACAACAUACAC__UAC__ACGUAUGUG_GA_UG__UGUG
...(((((..((((((((..((((((((((......)))))))))).....))))))))..))))).............................................. (-16.42 = -16.70 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:09 2006