Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,144,314 – 12,144,405 |
Length | 91 |
Max. P | 0.814490 |
Location | 12,144,314 – 12,144,405 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 98 |
Reading direction | reverse |
Mean pairwise identity | 75.77 |
Mean single sequence MFE | -17.15 |
Consensus MFE | -2.20 |
Energy contribution | -2.20 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.72 |
Structure conservation index | 0.13 |
SVM decision value | 0.66 |
SVM RNA-class probability | 0.814490 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12144314 91 - 22224390 UGGCCUCUUUU-AACUUUUUUGCCAG--C-AGCGCAAGUUCUCGA-AAACAUUUUCAAGUUUUCAAGUGUUGCAAUUUCUCAGCAACCCCCC--CCCC ((((.......-.........))))(--(-(((((..(....)((-((((........))))))..)))))))...................--.... ( -17.59) >DroSec_CAF1 17435 83 - 1 UGGCCUCUUUU-AACUUUUGUGCCAG--C-AGCGCAAGUUCUCGA-AAACAUUUUCAAGUUUUCAAGUGUUGCAAUUUCUCAGC----------CCCC (((((......-.......).))))(--(-(((((..(....)((-((((........))))))..)))))))...........----------.... ( -18.52) >DroEre_CAF1 16912 83 - 1 UGGCCUCUUUU-AACUUUUGUGCCAG--C-AGCGCAAGUUCUCGA-AAACAUUUUCAAGUUUUCAAGUGUUGCAAUUUCUCAGC----------CCCC (((((......-.......).))))(--(-(((((..(....)((-((((........))))))..)))))))...........----------.... ( -18.52) >DroWil_CAF1 13608 83 - 1 UGGCCUCUGGGGAACUUUU--UCCAG--CUUGCGGAAACUCUCAAAAAACAUUUUCAACUUCUCAAGUGUUGCAAUUUCUCUCC----------UCC- .((...((((..(....).--.))))--.(((((....)........(((((((..........))))))))))).......))----------...- ( -13.80) >DroMoj_CAF1 22449 85 - 1 --G-CUUCACA-AACUUUU--GCCAGAGC-A----AAGUUGGC-A-AAACAUUUUCAAGUUUUCAAGUGUUGCAAUUUCUUGGCCAACCUCCGCACCA --(-(......-....(((--((....))-)----))((((((-(-((((........)))))((((...........))))))))))....)).... ( -17.30) >consensus UGGCCUCUUUU_AACUUUU_UGCCAG__C_AGCGCAAGUUCUCGA_AAACAUUUUCAAGUUUUCAAGUGUUGCAAUUUCUCAGC__________CCCC ...............................................(((((((..........)))))))........................... ( -2.20 = -2.20 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:06 2006