Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,142,656 – 12,142,757 |
Length | 101 |
Max. P | 0.575282 |
Location | 12,142,656 – 12,142,757 |
---|---|
Length | 101 |
Sequences | 5 |
Columns | 116 |
Reading direction | forward |
Mean pairwise identity | 63.41 |
Mean single sequence MFE | -30.69 |
Consensus MFE | -16.50 |
Energy contribution | -15.74 |
Covariance contribution | -0.76 |
Combinations/Pair | 1.21 |
Mean z-score | -1.39 |
Structure conservation index | 0.54 |
SVM decision value | 0.08 |
SVM RNA-class probability | 0.575282 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12142656 101 + 22224390 UACCCACAUCCACACCCAUAACCCCCUCGCCAUUGUUACCUUCUAUUGCUCAUUCGCUGCAAGGGCGAUUAGUCGGUGGG-----UGGUGGG-----U----GGUAGGAGAAAGG- ..((....(((.(((((((.(((((((((((.((((...........((......)).)))).)))))......)).)))-----).)))))-----)----)...)))....))- ( -35.70) >DroSec_CAF1 15766 94 + 1 ------CACCCACACCCAUAACCCCCUCGCCAUUGUUGCCUUCUAUUGCUCAUUCGCUGCAAGGGCGAUUAGUCGGUGGG-----UGGUGGG-----C----GACAG-AAAAUGG- ------(.(((((((((((.......(((((.((((.((................)).)))).))))).......)))))-----).)))))-----.----)....-.......- ( -31.93) >DroEre_CAF1 15335 82 + 1 CUCCCACACCCACACCCACAUCCACA--CCCAUUGUUG-CUUCUAUUGCUCAUUCGCUGCA-GGGCGAUUAGUCGGUGGG-----UGGUGG------------------------- .....................(((((--(((((((..(-((...(((((((..........-))))))).))))))))))-----).))))------------------------- ( -24.60) >DroYak_CAF1 12360 87 + 1 UACUCAUACCCCCUC-------------UCCAGUUUUG-CUUCUAUUGCUUAUUCGCUGCAAGGGCGAUUAGUCGAUGGG-----UGGUGGG-----C----GGAAA-AGAAGGAU ........(((((..-------------.(((......-..(((((((.(((.(((((.....))))).))).)))))))-----))).)))-----.----))...-........ ( -22.40) >DroAna_CAF1 16694 103 + 1 UGCUCUUUGCG-----------CCUUUCCCCUUUGUUG-CCUUUAUUGCUCAUUCGCUGCAAGGGCGAUUAGUCGGUGAAAAGGGGGGAGGGGAUAGAGUCAGAAAA-AAAAGGGG .(((((...(.-----------(((..(((((((.(..-((...(((((((...........))))))).....))..))))))))..))).)..))))).......-........ ( -38.80) >consensus UACCCACACCCACACCCA_A_CCCCCUCCCCAUUGUUG_CUUCUAUUGCUCAUUCGCUGCAAGGGCGAUUAGUCGGUGGG_____UGGUGGG_____C____GAAAA_AAAAGGG_ .............................(((((.......(((((((((...(((((.....)))))..)).)))))))......)))))......................... (-16.50 = -15.74 + -0.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:05 2006