Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,140,594 – 12,140,691 |
Length | 97 |
Max. P | 0.997325 |
Location | 12,140,594 – 12,140,691 |
---|---|
Length | 97 |
Sequences | 3 |
Columns | 101 |
Reading direction | reverse |
Mean pairwise identity | 75.50 |
Mean single sequence MFE | -32.68 |
Consensus MFE | -19.97 |
Energy contribution | -20.31 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -2.59 |
Structure conservation index | 0.61 |
SVM decision value | 2.84 |
SVM RNA-class probability | 0.997325 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12140594 97 - 22224390 UGGCGCCACCUGGCGGCUAAUGCUGCCAGCUCACCAACACAGGCGCACCGGGGAAAA----CUCGCACAGACACACACACAUGGAUAUAUGCCGGAAAAGC ..(((((..((((((((....))))))))............))))).((((......----.((.....))........((((....))))))))...... ( -29.54) >DroEre_CAF1 13330 77 - 1 UGGCGCCACCUGGCGGCUAAUGCUGCCAGCUCACCAACACAGGCGCG------------------------CACACACACAUGCAUGGCUGCCGGAAAAGC .(((((((..(((((((....)))))))((.(.((......)).).)------------------------).............)))).)))........ ( -29.10) >DroYak_CAF1 10204 100 - 1 UGGCGCCACCUGGCGGCUAAUGCUGCCAGCUCACCAACACAGACGCAC-GAGGAAAAUUCGUGCACACACACACACACACAUAGGUGGAUGCCGAAAGAGC .((((((((((((((((....)))))).................((((-(((.....)))))))..................)))))).))))........ ( -39.40) >consensus UGGCGCCACCUGGCGGCUAAUGCUGCCAGCUCACCAACACAGGCGCAC_G_GGAAAA______C_CACA_ACACACACACAUGGAUGGAUGCCGGAAAAGC ..(((((..((((((((....))))))))............)))))....................................................... (-19.97 = -20.31 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:04 2006