Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,129,393 – 12,129,485 |
Length | 92 |
Max. P | 0.574394 |
Location | 12,129,393 – 12,129,485 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 94 |
Reading direction | reverse |
Mean pairwise identity | 82.80 |
Mean single sequence MFE | -31.43 |
Consensus MFE | -20.68 |
Energy contribution | -19.85 |
Covariance contribution | -0.83 |
Combinations/Pair | 1.30 |
Mean z-score | -1.87 |
Structure conservation index | 0.66 |
SVM decision value | 0.08 |
SVM RNA-class probability | 0.574394 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12129393 92 - 22224390 AUAGGCACAUUAUGUGCUCCGAGCAGGCGGGAUGUGAGCAGCACUCGCUGUCCGAGCAAUCGGUCAUUCCGUCUAUAUA-CAAAACAACA-UUA ...(((((.....)))))......((((((((((...(((((....)))))((((....)))).)))))))))).....-..........-... ( -32.00) >DroPse_CAF1 3927 94 - 1 AGAGGCACAUGAUGUGCUCGGAGCAGGCCGGGUGCGAGCAGCACUCGCUGUCCGAGCAGUCGGUCAUCCCAUCUGGGAACGGAUAGAACGACUG ....((((.....))))(((((.(((..(((((((.....))))))))))))))).(((((((((.((((....))))...)))....)))))) ( -40.10) >DroSec_CAF1 4088 92 - 1 AUAGGCACAUUAUGUGCUCCGAGCAGGCGGGAUGUGAGCAGCACUCGCUGUCAGAGCAAUCGGUCAUUCCAUCUAUAUA-AAAUACAACA-UUA ...(((((.....)))))......((..(((((((((.((((....)))))))((....))...))))))..)).....-..........-... ( -22.70) >DroSim_CAF1 4059 92 - 1 AUAGGCACAUUAUGUGCUCCGAGCAGGCGGGAUGUGAGCAGCACUCGCUGUCCGAGCAAUCGGUCAUUCCAUCUAUAUA-AAAUAGAACA-UUA ...(((((.....)))))((.....)).((((((...(((((....)))))((((....)))).)))))).(((((...-..)))))...-... ( -27.80) >DroMoj_CAF1 4490 91 - 1 AGAGACACAUAAUGUGCUCGGAGCAGGCUGGAUGCGAACAGCAUUCGCUGUCUGAACAAUCGGUCAUACCAUCUGCGCAUGAAUAGAGU---UA .(((.(((.....))))))...(((((.(((..(((((.....)))))((.((((....)))).))..)))))))).............---.. ( -25.90) >DroPer_CAF1 191 94 - 1 AGAGGCACAUGAUGUGCUCGGAGCAGGCCGGGUGCGAGCAGCACUCGCUGUCCGAGCAGUCGGUCAUCCCAUCUGGGAACGGAUAGAACGACUG ....((((.....))))(((((.(((..(((((((.....))))))))))))))).(((((((((.((((....))))...)))....)))))) ( -40.10) >consensus AGAGGCACAUUAUGUGCUCCGAGCAGGCGGGAUGCGAGCAGCACUCGCUGUCCGAGCAAUCGGUCAUUCCAUCUAUAUA_GAAUAGAACA_UUA ...(((((.....)))))(((......)))((((.(((((((....)))))((((....))))...)).))))..................... (-20.68 = -19.85 + -0.83)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:01 2006