Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,128,399 – 12,128,510 |
Length | 111 |
Max. P | 0.729893 |
Location | 12,128,399 – 12,128,510 |
---|---|
Length | 111 |
Sequences | 5 |
Columns | 118 |
Reading direction | forward |
Mean pairwise identity | 74.89 |
Mean single sequence MFE | -33.84 |
Consensus MFE | -17.40 |
Energy contribution | -19.44 |
Covariance contribution | 2.04 |
Combinations/Pair | 1.23 |
Mean z-score | -1.82 |
Structure conservation index | 0.51 |
SVM decision value | 0.42 |
SVM RNA-class probability | 0.729893 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12128399 111 + 22224390 UUUAACAUGCCGGAAGCUGAGUUAGCAGGCCCCUUUCC-UCUUUUUUUUUUUUACCAUCCAAAUGGUGUGUAAGGGCCAAAA------AAGGGGGAGGGCGUUGCUGCUACCUUACCC ........(.(....))((((.((((((((.(((((((-((((((((.(((((((((((.....)))).)))))))..))))------))))))))))).))..)))))).))))... ( -37.80) >DroPse_CAF1 3066 93 + 1 UUUAACAUAACGGAAGCUGGGUUAGCAGGGCUCUAUAGGGACCG-----CUCCACCA--GUAGCGG--UGCCAAUGCCAA----------------UGCCAGUGCCAGUACCGUACCU .........((((..(((((....(((.(((......((.((((-----((.(....--).)))))--).))...)))..----------------))).....))))).)))).... ( -31.30) >DroSec_CAF1 3134 105 + 1 UUUAACAUGCCGGAAGCUGAGUUAGCAGGCCCCUUUCU-UCUUU------UUUACCAUCGAAAUGGUGUGUAAGGGCCAAAA------AGGAAGGAGGGCGUUGCUGCUACCUUACCC ........(.(....))((((.((((((((.(((((((-(((((------((((((((....)))))(.((....)))))))------))))))))))).))..)))))).))))... ( -32.30) >DroSim_CAF1 3113 106 + 1 UUUAACAUGCCGGAAGCUGAGUUAGCAGGCCCCUUUCU-UCUUU-----UUUUACCAUCGAAAUGGUGUGUAAGGGCCAAAA------AGGAAGGAGGGCGUUGCUGCUACCUUACCC ........(.(....))((((.((((((((.(((((((-(((((-----(((((((((....))))))..........))))------))))))))))).))..)))))).))))... ( -32.40) >DroEre_CAF1 2792 110 + 1 UUUAACAUUCCGGAAGCUGAGUUAGCAAGCCCCUUUCU-UCUU-------UUUACCAUCGAAAUGGUGUGUAAGGCAAAAAAAAAAGAAGGGAGGCGGGCGUUGCUGCUACCUUACCC ...........(((((...(((.(((((((((((..((-((((-------((((((((....))))).((.....))....)))))))))..))..)))).))))))))..))).)). ( -35.40) >consensus UUUAACAUGCCGGAAGCUGAGUUAGCAGGCCCCUUUCU_UCUUU______UUUACCAUCGAAAUGGUGUGUAAGGGCCAAAA______AGGAAGGAGGGCGUUGCUGCUACCUUACCC ...........(((((...(((.((((((((((((((...............((((((....)))))).((....)).............))))).)))).))))))))..))).)). (-17.40 = -19.44 + 2.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:00 2006