Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,127,017 – 12,127,113 |
Length | 96 |
Max. P | 0.942090 |
Location | 12,127,017 – 12,127,113 |
---|---|
Length | 96 |
Sequences | 3 |
Columns | 97 |
Reading direction | reverse |
Mean pairwise identity | 81.09 |
Mean single sequence MFE | -15.10 |
Consensus MFE | -10.42 |
Energy contribution | -11.53 |
Covariance contribution | 1.11 |
Combinations/Pair | 1.05 |
Mean z-score | -2.37 |
Structure conservation index | 0.69 |
SVM decision value | 1.32 |
SVM RNA-class probability | 0.942090 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12127017 96 - 22224390 AUUUCUAGCUAAAAAGAUGAU-GUAAAAAUGGAACUAUCAACCAAUAACUAUAUUUGGUUGAACAGGCAAGAAAUGUCUAUAUUAAAUAAGCUCAAA ......((((.......((((-(((............((((((((.........))))))))...((((.....)))))))))))....)))).... ( -16.20) >DroSec_CAF1 1801 81 - 1 AUUUCUAGCUAAAAAGAUGAUGGUAAAAAUGGGACUAUCAACCAAUAACUAUAUUUAGUUGAGCAGGAAAGAA----------------AGCUCAAA .(((((.(((.......(((((((.........))))))).....((((((....))))))))).)))))...----------------........ ( -16.60) >DroSim_CAF1 1776 81 - 1 AUUUCUAGCUAAAAAUAUGAAGGUAAAAAUGAGACUAUCAACCAAUAACUAUAUAUAGUUGAGCAGGAAAGAA----------------AGCUUAAA .(((((.(((...........(((.....(((.....))))))..((((((....))))))))).)))))...----------------........ ( -12.50) >consensus AUUUCUAGCUAAAAAGAUGAUGGUAAAAAUGGGACUAUCAACCAAUAACUAUAUUUAGUUGAGCAGGAAAGAA________________AGCUCAAA .(((((.(((.......(((((((.........))))))).....((((((....))))))))).)))))........................... (-10.42 = -11.53 + 1.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:57 2006