Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,118,689 – 12,118,779 |
Length | 90 |
Max. P | 0.570283 |
Location | 12,118,689 – 12,118,779 |
---|---|
Length | 90 |
Sequences | 3 |
Columns | 96 |
Reading direction | forward |
Mean pairwise identity | 85.11 |
Mean single sequence MFE | -28.07 |
Consensus MFE | -21.09 |
Energy contribution | -22.76 |
Covariance contribution | 1.67 |
Combinations/Pair | 1.00 |
Mean z-score | -1.82 |
Structure conservation index | 0.75 |
SVM decision value | 0.07 |
SVM RNA-class probability | 0.570283 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12118689 90 + 22224390 ACCUGCUGGCGCCGCAUUCCCACUGCCAAUGGCCAUAAAUCGCC------GGCCAUAGUUAUCGAUAAACGAUAGCCGGGAGGGGUCCUUUUUUUC .(((.(((((((((((.......)))....(((........)))------)))......(((((.....)))))))))).)))............. ( -28.80) >DroEre_CAF1 42000 90 + 1 ACCUGCUGGCGCCGCAUUCCCACUGCCAAUGGCCAUAAAUCGCC------GGCCAUAGUUAUCGAUAAACGAUAGCCGGGAGGGGUCCUUUUUUUC .(((.(((((((((((.......)))....(((........)))------)))......(((((.....)))))))))).)))............. ( -28.80) >DroAna_CAF1 11283 88 + 1 ACCUGCUGGCGCCGCAUUCCCACUGCCAAUGGCCAUAAAUCGCCAUGGCUGGCCAUGGUUAUCGAUAAACGAUAGCCC-------UCCCC-CAUCC ......((((((((((.......)))..(((((........))))))))..)))).((((((((.....)))))))).-------.....-..... ( -26.60) >consensus ACCUGCUGGCGCCGCAUUCCCACUGCCAAUGGCCAUAAAUCGCC______GGCCAUAGUUAUCGAUAAACGAUAGCCGGGAGGGGUCCUUUUUUUC .(((.(((((...(((.......)))..((((((................))))))...(((((.....)))))))))).)))............. (-21.09 = -22.76 + 1.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:56 2006