| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 12,100,221 – 12,100,331 |
| Length | 110 |
| Max. P | 0.708407 |
| Location | 12,100,221 – 12,100,331 |
|---|---|
| Length | 110 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 82.08 |
| Mean single sequence MFE | -27.84 |
| Consensus MFE | -21.27 |
| Energy contribution | -21.13 |
| Covariance contribution | -0.14 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.64 |
| Structure conservation index | 0.76 |
| SVM decision value | 0.37 |
| SVM RNA-class probability | 0.708407 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12100221 110 + 22224390 UCAAG---CAGCCGUCGUCACUCGACAAACACAAUUAAUAAGCGCUUGGAAAAAUGUUUGAGGCGCUUAUCGCGCGACGCUUUUCAGGCCGUUUUUGCCC---CCCUUUC----ACCAUU ..(((---(.(((((((.....))))...........((((((((((.(((.....))).)))))))))).(((...)))......))).))))......---.......----...... ( -28.10) >DroPse_CAF1 37969 112 + 1 UCAAGCAGCAGCCGUCGUCACUCGACAAACACAAUUAAUAAGCGCUUGGAAAAAUGUUUGAGGCGCUUAUCGCACGUCGCUUU-CAUGCCUC-----CCAU--CCAAUACCAAUACCAAC ..((((.((.((.((((.....))))...........((((((((((.(((.....))).)))))))))).))..)).)))).-........-----....--................. ( -24.80) >DroSec_CAF1 12517 101 + 1 UCAAG---CAGCCGUCGUCACUCGACAAACACAAUUAAUAGGCGCUUGGAAAAAUGUUUGAGGCGCUUAUCGCGCGACGCUUUUCAGGCCGUUUUUCCCC----------------CAUU ..(((---(.(((((((.....))))((......))....)))))))(((((((((((((((((((.....)))).......)))))).)))))))))..----------------.... ( -28.41) >DroEre_CAF1 24066 104 + 1 UCAAG---CUGCCGUCGUCACUCGACAAACACAAUUAAUAAGCGCUUGGAAAAAUGUUUGAGGCGCUUAUCGCGCGGCGCUUUUCAC-CCGCUUCUCCCCUUGCCAAU------------ ..(((---(.(((((.(((....)))...........((((((((((.(((.....))).))))))))))...))))))))).....-....................------------ ( -28.80) >DroYak_CAF1 24532 117 + 1 UCAAG---CCGCCGUCGUCACUCGACAAACACAAUUAAUAAGCGCUUGGAAAAAUGUUUGAGGCGCUUAUCGCGCGUCGCUUUUCAGGCCGCUUUUCCCCUUGCCAUUUCCAUUACCAUU ..(((---(.(((((((.....))))...........((((((((((.(((.....))).)))))))))).(((...)))......))).)))).......................... ( -30.50) >DroPer_CAF1 37637 112 + 1 UCAAGCAGCAGCCGUCGUCACUCGACAAACACAAUUAAUAAGCGCUUGGAAAAAUGUUUGAGGCGCUUAUCGCGCGUCGCUUU-CAUGCCUC-----CCAU--CCAAUACCAAUACCAAC ..((((.((.((.((((.....))))...........((((((((((.(((.....))).)))))))))).))..)).)))).-........-----....--................. ( -26.40) >consensus UCAAG___CAGCCGUCGUCACUCGACAAACACAAUUAAUAAGCGCUUGGAAAAAUGUUUGAGGCGCUUAUCGCGCGUCGCUUUUCAGGCCGCUUUUCCCCU__CCAAU_C____ACCAUU ..........((.((((.....))))...........((((((((((.(((.....))).)))))))))).))............................................... (-21.27 = -21.13 + -0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:46 2006