Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,099,936 – 12,100,036 |
Length | 100 |
Max. P | 0.693039 |
Location | 12,099,936 – 12,100,036 |
---|---|
Length | 100 |
Sequences | 6 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 78.88 |
Mean single sequence MFE | -30.20 |
Consensus MFE | -11.19 |
Energy contribution | -13.19 |
Covariance contribution | 2.00 |
Combinations/Pair | 1.16 |
Mean z-score | -2.71 |
Structure conservation index | 0.37 |
SVM decision value | 0.33 |
SVM RNA-class probability | 0.693039 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12099936 100 + 22224390 UUGCCACACUUCUGGCAAAUAUUAAAAAUCUUUCUCGCCUG---CCCAGCAGGUGGCGGGAUGGCAGAGCUCAACUAAAUUCCAGCCGCUUUUCCCAAGGUUU ((((((......)))))).......(((((((..(((((((---(...)))))))).((((.(((.(.(((............)))))))..))))))))))) ( -31.20) >DroPse_CAF1 37769 91 + 1 UUGCCACACUUCUGGCAAAUAUUAAAAAAUCUCC--CCCCG---CCCAGCAGGUGGCCGUGGGAGGGCGCCAGAUUAAACUAUAA----UUUUCC-A--GUUU ((((((......)))))).........(((((((--(((((---((((.....)))..))))).)))....))))).........----......-.--.... ( -23.60) >DroSec_CAF1 12252 103 + 1 UUGCCACACUUAUGGCAAAUAUUAAAAAUCUUUCUUGCCUGCCGCCCAGCAGGUGGCAGUAUGGCAGAGCUCAACUAAAUUCCAGCCGCUUUUCCCAAGGUUU ((((((......))))))..............(((((.((((((((.....))))))))...((.(((((.................))))).)))))))... ( -28.93) >DroEre_CAF1 23823 98 + 1 UUGCCACACUUCUGGCAAAUAUUAAAAAUCUUUC--GCCUG---CCCAGCAGGUGGGCGGCUGGAGAAGCUCAACUGAAUUCCAGCCGCUUUUCCCAAGGUUU ((((((......)))))).......(((((((.(--(((((---(...)))))))(((((((((((...(......)..)))))))))))......))))))) ( -40.00) >DroYak_CAF1 24275 96 + 1 UUGCCACACUUCUGGCAAAUAUUAAAAAUCCUUC--GCCUG---CCCAGCAGGUG-GCGGGUGGAAAAGCUCAACGAAAUUCCAGCCGCUU-UCCCAAGGUUU ((((((......))))))...........(((((--(((((---(...)))))))-((((.(((((...(.....)...))))).))))..-....))))... ( -33.90) >DroPer_CAF1 37443 91 + 1 UUGCCACACUUCUGGCAAAUAUUAAAAAAUCUCC--CCCCG---CCCAGCAGGUGGCCGUGGGAGGGCGCCAGAUUAAACUAUAA----UUUUCC-A--GUUU ((((((......)))))).........(((((((--(((((---((((.....)))..))))).)))....))))).........----......-.--.... ( -23.60) >consensus UUGCCACACUUCUGGCAAAUAUUAAAAAUCCUUC__GCCUG___CCCAGCAGGUGGCCGGGUGGAAGAGCUCAACUAAAUUCCAGCCGCUUUUCCCAAGGUUU ..(((((.((.((((..............................)))).))))))).....((((((((.................))))))))........ (-11.19 = -13.19 + 2.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:43 2006