Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,094,513 – 12,094,612 |
Length | 99 |
Max. P | 0.983941 |
Location | 12,094,513 – 12,094,612 |
---|---|
Length | 99 |
Sequences | 4 |
Columns | 99 |
Reading direction | forward |
Mean pairwise identity | 91.41 |
Mean single sequence MFE | -35.25 |
Consensus MFE | -30.98 |
Energy contribution | -31.73 |
Covariance contribution | 0.75 |
Combinations/Pair | 1.06 |
Mean z-score | -2.54 |
Structure conservation index | 0.88 |
SVM decision value | 1.96 |
SVM RNA-class probability | 0.983941 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12094513 99 + 22224390 GGCAGUUCGGGAAGUGGUUAUUUGGCUAUUUGUCAUGCGGCCAUGUCGAUGGAGUGUCGAUGGAGGUUGCGUCAUAAGUGCUCAAGGUGUAGUUUCCCG .......((((((((.....((((((.((((((.((((((((.(((((((.....)))))))..)))))))).)))))))).)))).....)))))))) ( -35.30) >DroSec_CAF1 7513 99 + 1 GGCAGUUCGGGAAGUUGUUAUUUGGCUAUUUGUCAUGCGGCCAUGUCGAUGGAGUGUCGAUGGAGGUUGCGUCAUAAGUGCCCAAGGUGUAGUUUCCCG .......((((((..((...(((((.(((((((.((((((((.(((((((.....)))))))..)))))))).))))))).)))))...))..)))))) ( -38.50) >DroEre_CAF1 18556 99 + 1 GGCAGUUCGGGAAGUGGUUAUUUGGCUAUUUGUCAUGCGGCCAUGUCGAUGGAGUGUCGAUGGAGGUUGCGUCAUAAGUGCCCAAGGUGUAGUUUCCCG .......((((((((.....(((((.(((((((.((((((((.(((((((.....)))))))..)))))))).))))))).))))).....)))))))) ( -37.30) >DroYak_CAF1 19062 88 + 1 GGCAGUUCGUGAAGUGGUUAUUUGGCUAUUUGUCAUGUGGCCAUGUCG-----------AUGGAGGUUGCGCCAUAAGUGGCCAAGGUGUAGUUUCCCG ......(((....((((((((.((((.....)))).))))))))..))-----------).(((..(((((((............)))))))..))).. ( -29.90) >consensus GGCAGUUCGGGAAGUGGUUAUUUGGCUAUUUGUCAUGCGGCCAUGUCGAUGGAGUGUCGAUGGAGGUUGCGUCAUAAGUGCCCAAGGUGUAGUUUCCCG .......(((((((......(((((.(((((((.((((((((.(((((((.....)))))))..)))))))).))))))).)))))......))))))) (-30.98 = -31.73 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:39 2006