Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,088,659 – 12,088,775 |
Length | 116 |
Max. P | 0.801300 |
Location | 12,088,659 – 12,088,775 |
---|---|
Length | 116 |
Sequences | 4 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 80.94 |
Mean single sequence MFE | -22.88 |
Consensus MFE | -13.71 |
Energy contribution | -14.15 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.17 |
Mean z-score | -2.14 |
Structure conservation index | 0.60 |
SVM decision value | 0.62 |
SVM RNA-class probability | 0.801300 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12088659 116 - 22224390 AAUUUACCAUUGAAAAGUACACCGAUAUAUCAUCUGAUCUUAUUUGGGCU-UCAUUCUUUUUGAGGCUUACAUAGGCC--CCCAAAAACUAAAGUCCUUUUCAGUUUCCAUUAAAUAUU ........(((((((((.((...(((.....)))....(((((.((((((-(((.......))))))))).)))))..--.............)).))))))))).............. ( -22.60) >DroSec_CAF1 1480 118 - 1 AAUUUACCAUUGAAAAGUACAUCGAUAUAUCAUCUGAUCUUAUUCGGAUU-UUAGUCAUUUUGGGGCUUACAUAGGCCGCCCCUAAAACUAAAGUCCUUUCCAGUUGCCAUUAAAUAUU .(((((.....((((((...((((((.....))).)))))).)))(((((-(((((..(((.(((((...........))))).)))))))))))))..............)))))... ( -23.60) >DroEre_CAF1 12838 114 - 1 AAUUUAACGUUGAAAAGUACACCGAUGCAUCAUCCGAUUUUAUUCGGACU-GCAGUCCUUUUAAGGCUUACAUAGGCC--CCU--AAACUAAAGUCCUUUUCGGUUUCCAUUAAAUAUU .((((((....((((((.((...((((((...(((((......))))).)-))).)).......(((((....)))))--...--........)).))))))((...)).))))))... ( -24.00) >DroYak_CAF1 13148 106 - 1 AAUUUAACAUUGAAAAGUACACCGAUACAUCAAAUGAUCUGAUUCGGAUUUUUAGUC--UUUAAGGCUUACACA-----------AAGCAAAAGUCCUUUUCGGUUUACGUUAAAUAUU .((((((((((((((((.((.((((...((((.......))))))))..........--......((((.....-----------))))....)).)))))))))....)))))))... ( -21.30) >consensus AAUUUAACAUUGAAAAGUACACCGAUACAUCAUCUGAUCUUAUUCGGACU_UCAGUC_UUUUAAGGCUUACAUAGGCC__CCC__AAACUAAAGUCCUUUUCAGUUUCCAUUAAAUAUU ........(((((((((.((.((((...(((....))).....)))).................(((((....)))))...............)).))))))))).............. (-13.71 = -14.15 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:35 2006