Locus 4620

Sequence ID X_DroMel_CAF1
Location 12,088,463 – 12,088,557
Length 94
Max. P 0.542131
window7594

overview

Window 4

Location 12,088,463 – 12,088,557
Length 94
Sequences 4
Columns 94
Reading direction reverse
Mean pairwise identity 89.07
Mean single sequence MFE -22.30
Consensus MFE -16.95
Energy contribution -18.57
Covariance contribution 1.62
Combinations/Pair 1.04
Mean z-score -1.46
Structure conservation index 0.76
SVM decision value 0.02
SVM RNA-class probability 0.542131
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12088463 94 - 22224390
UACAAAACAAUUGAGAACUCGCUGGAUAAAUUCGGCAUUUGCAGUUGCAAAGUUGAAGUUUUGGCCCCUUCUCCACCAUCGCCAAAAAGGCGUC
............(((((...((..((....((((((.(((((....)))))))))))..))..))...)))))......((((.....)))).. ( -26.70)
>DroSec_CAF1 1285 93 - 1
UACAAAACAAUUGAGAACUCGCAGGAUAAAUUCGGCAUUUGCAAAUGCAAAGUUGAAGUUUCGGCCCCAUCUC-UCCACCGCCAAAAAGGCGUC
............((((....((.(((....((((((.(((((....)))))))))))..))).))....))))-.....((((.....)))).. ( -23.70)
>DroEre_CAF1 12648 88 - 1
UACAAAACAAUUGAGAACUCGCAGGAUAAAUUCGGCAUUUGCAGUUGCAAAGUUGAAGUUUCGGCUCCUGCUCC------ACCAAAAAGGCGUC
....................((((((....((((((.(((((....)))))))))))((....))))))))..(------.((.....)).).. ( -19.90)
>DroYak_CAF1 12958 88 - 1
UACAAAACAAUUGAGAACUCGCAGGAUAAAUUCGGCAUUUGCAGUUGCAAAGUUGAAGUUUGGGCUUCUUCUCC------CCCAAAAAGGCGUC
...................(((........((((((.(((((....))))))))))).((((((..........------))))))...))).. ( -18.90)
>consensus
UACAAAACAAUUGAGAACUCGCAGGAUAAAUUCGGCAUUUGCAGUUGCAAAGUUGAAGUUUCGGCCCCUUCUCC______GCCAAAAAGGCGUC
............(((((...((.(((....((((((.(((((....)))))))))))..))).))...)))))......((((.....)))).. (-16.95 = -18.57 +   1.62)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:34 2006