Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,087,091 – 12,087,189 |
Length | 98 |
Max. P | 0.795286 |
Location | 12,087,091 – 12,087,189 |
---|---|
Length | 98 |
Sequences | 5 |
Columns | 109 |
Reading direction | reverse |
Mean pairwise identity | 83.82 |
Mean single sequence MFE | -23.62 |
Consensus MFE | -17.56 |
Energy contribution | -18.36 |
Covariance contribution | 0.80 |
Combinations/Pair | 1.00 |
Mean z-score | -1.90 |
Structure conservation index | 0.74 |
SVM decision value | 0.60 |
SVM RNA-class probability | 0.795286 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12087091 98 - 22224390 CACCCAUUUCCAUUCCCCAACCCAUUUACCGUCUCCUAGGACCAUGUAACCGAGUGUCCGGAUACGGAUCCAUGUCCGUGUCCAUGUCCAUGUCCAUG----------- ......................................((((.(((.....(......)((((((((((....)))))))))).....)))))))...----------- ( -21.90) >DroSec_CAF1 2 90 - 1 CACCCAUUUCCAUUCCCCAACCCAUUUACCGUCUCCUAGGACCAUGUAACCGAGUGUCCGGAUACGGAUCCAUGUCCGUGUCCAUGUCCA------------------- ......................................(((((((........)))...((((((((((....))))))))))..)))).------------------- ( -21.80) >DroSim_CAF1 2 92 - 1 CACCCAUUUCCAUUCCCCAACCCAUUUACCGUCUCCUAGGACCAUGUAACCGAGUGUCCGGAUACGGAUCCAUGUCCGUGUCCAUGUCCA------UG----------- ......................................(((((((........)))...((((((((((....))))))))))..)))).------..----------- ( -21.80) >DroEre_CAF1 11343 103 - 1 CACCCAUUUCCAUGCCCCAACCCAUUUACCGUCUCCUAGGACCGUGUAACCGAGUGUCCGGAUACGGAUCCAUGUCCAUG------UCCGUGUCCGUGUCCAUGUCCAU ..........((((..((....................(((((..........).))))(((((((((..(((....)))------)))))))))).)..))))..... ( -24.00) >DroYak_CAF1 11629 109 - 1 CCCCCAUUUCCAUUCUCCAACACAUUUACCGUCUCCUAGGACCAUGUAACCGAGUGUCCGGAUACGGAUCCAUGUCCGUGUCCAUGUCUAUGUCCGUGUCCGUGUCCGU ..........(((((......((((...((........))...))))....)))))..((((((((((..((((..((((........))))..)))))))))))))). ( -28.60) >consensus CACCCAUUUCCAUUCCCCAACCCAUUUACCGUCUCCUAGGACCAUGUAACCGAGUGUCCGGAUACGGAUCCAUGUCCGUGUCCAUGUCCAUGUCC_UG___________ ......................................(((((.((....)).).))))((((((((((....)))))))))).......................... (-17.56 = -18.36 + 0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:33 2006