Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,079,942 – 12,080,052 |
Length | 110 |
Max. P | 0.940456 |
Location | 12,079,942 – 12,080,052 |
---|---|
Length | 110 |
Sequences | 4 |
Columns | 112 |
Reading direction | forward |
Mean pairwise identity | 87.87 |
Mean single sequence MFE | -19.77 |
Consensus MFE | -15.10 |
Energy contribution | -15.35 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.00 |
Mean z-score | -2.46 |
Structure conservation index | 0.76 |
SVM decision value | 1.29 |
SVM RNA-class probability | 0.940456 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12079942 110 + 22224390 AGCUACCGACAGCCGCCACACACGGAAGCCAUAAAAACUUAUGGCAAAAUAUAUAAAAAUUCACCCUU-UUUAUUGUGGCAAACAAGGAGAAGGAGAAA-AAAAUAAAAUGC ............(((.......)))..(((((((....)))))))..............(((..((((-(((.((((.....)))).))))))).))).-............ ( -21.60) >DroVir_CAF1 20761 95 + 1 ---------------CCACACACGGAAGCCAUAAAAACUUAUGGCGAAAUA--UAAAAAUGCACCCUUUUUUAUUGUGGCAAACAACGAAAACGAGAAAUAAAAUAAAAUGC ---------------(((((.......(((((((....))))))).....(--((((((........))))))))))))................................. ( -15.90) >DroSec_CAF1 15752 109 + 1 AGCUACCGACAGCCGCCACACACGGAAGCCAUAAAAACUUAUGGCAAAAUAUAUAAAAAUUCACCCUU-UUUAUUGUGGCAAACAAGGAGAACGAGAAA--AAAUAAAAUGC .(((......))).((((((.......(((((((....))))))).......(((((((.......))-)))))))))))...................--........... ( -21.20) >DroAna_CAF1 13391 111 + 1 AGAUCCCGACAGCCGCCACACACGGAAGCCAUAAAAACUUAUGGCAAAAUAUAUAAAAAUUCACCCUU-UUUAUUGUGGCAAACAACGAGAACGAGAAAUAAAAUAAAAUGC .(.((.((......((((((.......(((((((....))))))).......(((((((.......))-)))))))))))......)).)).)................... ( -20.40) >consensus AGCUACCGACAGCCGCCACACACGGAAGCCAUAAAAACUUAUGGCAAAAUAUAUAAAAAUUCACCCUU_UUUAUUGUGGCAAACAACGAGAACGAGAAA_AAAAUAAAAUGC ..............((((((.......(((((((....)))))))........((((.(........).)))).))))))................................ (-15.10 = -15.35 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:29 2006