Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,076,870 – 12,076,961 |
Length | 91 |
Max. P | 0.997034 |
Location | 12,076,870 – 12,076,961 |
---|---|
Length | 91 |
Sequences | 3 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 70.34 |
Mean single sequence MFE | -29.77 |
Consensus MFE | -16.18 |
Energy contribution | -17.41 |
Covariance contribution | 1.23 |
Combinations/Pair | 1.10 |
Mean z-score | -2.41 |
Structure conservation index | 0.54 |
SVM decision value | 2.79 |
SVM RNA-class probability | 0.997034 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12076870 91 - 22224390 UAAAGGGUUAAGUUGU-CUUCAAGGGCUCGUUGG------AAUCAAUAAAUGCGGGUGGUUGGUCCGACCAAACCGCCCAUC-UUAACCCCAUAAUGCC ....(((((((((((.-.(((((.(...).))))------)..))).......((((((((((.....)).))))))))..)-)))))))......... ( -31.30) >DroSec_CAF1 12746 88 - 1 UAAAGGGUUAAGUUGU-CUUCAAGGGCUCGUUGG------CAUCAAUAAAUGCGGGUAG----UACGCCCAAACCGCCCAUCCUUAACCCCAUACUGCC ....(((((((((((.-...)))((((..(((.(------(((......))))((((..----...)))).))).))))...))))))))......... ( -28.60) >DroAna_CAF1 11379 88 - 1 AAAAGGGUUAAGUUUUCCUUCGAUGGUGGGGUGGUGCUUCAAUCAAUAAAUGCGGGUGGGUGGUC-------AUCGCCCAGGCAUUACCCCCUUC---- ..(((((........)))))....((.((((((((((((....((.....)).((((((......-------.))))))))))))))))))))..---- ( -29.40) >consensus UAAAGGGUUAAGUUGU_CUUCAAGGGCUCGUUGG______AAUCAAUAAAUGCGGGUGG_UGGUCCG_CCAAACCGCCCAUCCUUAACCCCAUACUGCC ....((((((((.............((..(((((........)))))....))((((((..............))))))...))))))))......... (-16.18 = -17.41 + 1.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:28 2006