Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,072,535 – 12,072,640 |
Length | 105 |
Max. P | 0.987771 |
Location | 12,072,535 – 12,072,640 |
---|---|
Length | 105 |
Sequences | 4 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 89.64 |
Mean single sequence MFE | -35.02 |
Consensus MFE | -33.26 |
Energy contribution | -33.08 |
Covariance contribution | -0.19 |
Combinations/Pair | 1.14 |
Mean z-score | -2.22 |
Structure conservation index | 0.95 |
SVM decision value | 2.09 |
SVM RNA-class probability | 0.987771 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12072535 105 + 22224390 GUGAAAGUGAAAUGAUGGUCCUGGCCUCGAGCGUUCUUUUUGCCGGAAA-AGGUUACCGUUUCGCA--CACUUGCAGAAUAAACAUGACCCAUAGAAUUGGGUCACUU (((...((((((((.(((.(((....(((.(((.......))))))...-)))))).)))))))).--)))..............(((((((......)))))))... ( -30.00) >DroSec_CAF1 8396 107 + 1 GUGAAAGUGAAAUGGGGGUCCUGGCCUCGGGCGUUCUUUCUGCCGGGAA-AGGUUACCGUUUCGCACACACUAGCAGAAUAAACAUGACCCAUAAAAUUGGGUCACUU (((...(((((((((..(.(((..(((..((((.......)))))))..-))))..)))))))))...)))..............(((((((......)))))))... ( -39.00) >DroEre_CAF1 7937 102 + 1 GUGAAAGUGAAAUGG-GGUCCUGGCCUCGGGCGCUCUUUUUGCCAGGAA-AGGUUACCACUUCGCA--CACUUGCAGAAUAAACAUGACCCAUA--AUUGGGUCGCUU (((...(((((.(((-...(((..(((..((((.......)))))))..-)))...))).))))).--)))...............((((((..--..)))))).... ( -34.20) >DroYak_CAF1 8821 104 + 1 GUGAAAGUGAAAUGGGGGUCCUGGCCUCGGGCGUUCUUACUGCCAGGAAAAGGUAACCAUUUCGCA--CACUUACAGAAUAAACAUGACCCAUA--AUUGGGUCGCUU (((...(((((((((..(.(((..(((..(((((....)).))))))...))))..))))))))).--)))...............((((((..--..)))))).... ( -36.90) >consensus GUGAAAGUGAAAUGGGGGUCCUGGCCUCGGGCGUUCUUUCUGCCAGGAA_AGGUUACCAUUUCGCA__CACUUGCAGAAUAAACAUGACCCAUA__AUUGGGUCACUU (((...(((((((((...(((((((...(((....)))...)))))))........)))))))))...)))..............(((((((......)))))))... (-33.26 = -33.08 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:27 2006