Locus 4612

Sequence ID X_DroMel_CAF1
Location 12,071,156 – 12,071,248
Length 92
Max. P 0.805891
window7582

overview

Window 2

Location 12,071,156 – 12,071,248
Length 92
Sequences 5
Columns 102
Reading direction forward
Mean pairwise identity 80.53
Mean single sequence MFE -17.62
Consensus MFE -11.64
Energy contribution -11.68
Covariance contribution 0.04
Combinations/Pair 1.14
Mean z-score -1.91
Structure conservation index 0.66
SVM decision value 0.63
SVM RNA-class probability 0.805891
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12071156 92 + 22224390
AUGUUCUCUUCAGGCAGCAAAUCCAUCACUUCAAGGAGUUGGGUUGGUAUGUCCAAAAACCAUCAGCAAAA---------UAAAGACAAGGAUGAAAAA-AG
.((((.((....)).)))).((((...((((....))))(((.((((.....))))...))).........---------.........))))......-.. ( -14.60)
>DroSec_CAF1 7015 98 + 1
AUGUUCUCUUCAGGC---AAAUCCAUCACUUCAAGGAGUUGGGUUGGUAUGUCCAAAAACCAUCACCAAAAAAAAAAAAAAAAAAACGAGGAGGAAAAA-AG
...((((((((.((.---....))..........((.(.(((.((((.....))))...))).).))....................))))))))....-.. ( -20.60)
>DroSim_CAF1 7012 90 + 1
AUGUUCUCUUCAGGC---AAAUCCAUCACUUCAAGGAGUUGGGUUGGUAUGUCCAAAAACCAUCAACAAAA--------AAAAAGACGAGGAGGAAAAA-AG
...((((((((....---.((((((..((((....))))))))))(((.(......).)))..........--------........))))))))....-.. ( -19.40)
>DroEre_CAF1 6600 80 + 1
AUAUUCUCUUCAGGC---AAAUCCAUCACUUCAAGGAGUUGGCUUGGUAUGUCCAAAUGCCACCAAAA------------------AAAGAAAGAAAAA-AG
...((((.(((((.(---((.(((..........))).))).))((((((......))))))......------------------...)))))))...-.. ( -16.00)
>DroYak_CAF1 7436 85 + 1
AUAUUCUUUUCAAGC---AAAUCCAUCACUUCAAGGAGUUGGGUUGGUAUGUCUAAAAACCAUCAAAAGAG--------------AAAAGAAAGAAAAACAG
...((((((((....---.((((((..((((....))))))))))(((.(......).))).........)--------------))))))).......... ( -17.50)
>consensus
AUGUUCUCUUCAGGC___AAAUCCAUCACUUCAAGGAGUUGGGUUGGUAUGUCCAAAAACCAUCAACAAAA__________AAA_ACAAGGAAGAAAAA_AG
...(((.((((........((((((..((((....))))))))))(((.(......).)))............................)))))))...... (-11.64 = -11.68 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:23 2006