Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,069,969 – 12,070,080 |
Length | 111 |
Max. P | 0.999880 |
Location | 12,069,969 – 12,070,080 |
---|---|
Length | 111 |
Sequences | 5 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 92.34 |
Mean single sequence MFE | -35.83 |
Consensus MFE | -31.18 |
Energy contribution | -31.82 |
Covariance contribution | 0.64 |
Combinations/Pair | 1.09 |
Mean z-score | -3.42 |
Structure conservation index | 0.87 |
SVM decision value | 4.36 |
SVM RNA-class probability | 0.999880 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12069969 111 - 22224390 AAAGGCCAGGAUAAUGGCAGCACAGGGAGUGCAAAUAAAAUCGUACUCCGAUUUAUUUGUACUUUUUGUUGGGCGCAAUUUCUGACUUGAUCAAUUUGAAACUUGGCCAUU ...(((((((....((((...((((((((((((((((((.(((.....)))))))))))))))))))))...)).)).((((...............)))))))))))... ( -37.86) >DroSec_CAF1 5830 111 - 1 AAAGGCCAGGAUAAUGGCAGCACAGGGAGUGCAAAUAAAGUCGUACUCCGAUUUAUUUGUACUUUUUGUUGGGCGCAAUUUCUGACUGGAUCAAUUUGAAACUUGGCCAUU ...(((((((....((((...((((((((((((((((((.(((.....)))))))))))))))))))))...)).))...(((....)))...........)))))))... ( -38.20) >DroSim_CAF1 5842 111 - 1 AAAGGCCAGGAUAAUGGCAGCACAGGGAGUGCAAAUAAAAUCGUACUCCGAUUUAUUUGUACUUUUUGUUGGGCGCAAUUUCUGACUGGAUCAAUUUGAAACUUGGCCAUU ...(((((((....((((...((((((((((((((((((.(((.....)))))))))))))))))))))...)).))...(((....)))...........)))))))... ( -38.20) >DroEre_CAF1 5445 111 - 1 AAAGGCCGGGAUAAUGGCAGCACAGGGAGUGCAAAUAAAAUCGCACUCCGAUUUAUUUGUACUUUUUGUGAGGCGCAAUUUCUGACUUGAUCAACUUAAAACUUUACAGCU .(((..(((((...((((..(((((((((((((((((((.(((.....))))))))))))))))))))))..)).))..))))).)))....................... ( -34.30) >DroYak_CAF1 5442 111 - 1 AAAGGCCGGGAUAAUGGCGGCACAGGGAGUGCAAAUAAAAUCGUACUCCAAUUUAUUUGUACUUCUUGUAAGGCGCAAUUUCUGACUCGAUCAAUUUAAAACUUUGCAGCU ...(..((((..(((.(((.(((((((((((((((((((............))))))))))))))))))..).))).))).....))))..)................... ( -30.60) >consensus AAAGGCCAGGAUAAUGGCAGCACAGGGAGUGCAAAUAAAAUCGUACUCCGAUUUAUUUGUACUUUUUGUUGGGCGCAAUUUCUGACUGGAUCAAUUUGAAACUUGGCCAUU ...(((((((....((((...(((((((((((((((((.((((.....)))))))))))))))))))))...)).)).....(((.....)))........)))))))... (-31.18 = -31.82 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:21 2006