Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,357,942 – 1,358,038 |
Length | 96 |
Max. P | 0.639647 |
Location | 1,357,942 – 1,358,038 |
---|---|
Length | 96 |
Sequences | 4 |
Columns | 96 |
Reading direction | reverse |
Mean pairwise identity | 80.88 |
Mean single sequence MFE | -28.90 |
Consensus MFE | -18.85 |
Energy contribution | -20.60 |
Covariance contribution | 1.75 |
Combinations/Pair | 1.14 |
Mean z-score | -1.75 |
Structure conservation index | 0.65 |
SVM decision value | 0.22 |
SVM RNA-class probability | 0.639647 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1357942 96 - 22224390 AGGACAGCCAGAAGCAUAUUCGCGGUGAGUUACGUUUUUCUGCUCUGGUUGAGUGACAACUCGUUUUUCAGGUGCCAUUGUGCAUGUGGCACAUUU ((((((((((((.(((.....(((........))).....))))))))))((((....)))))))))....(((((((.......))))))).... ( -32.00) >DroSec_CAF1 18225 95 - 1 AGGACAGCCAGAAGCAUAUUCGCGGUGAGUUACGUUUUUCUGCUCUGGUUGAAUGACAACUCGUUUUUCAGGUGCGAUUGUGCUAGUGGCACAUU- ......((((..((((((.(((((.((((((..(((.(((.((....)).))).))))))))(.....).).))))).))))))..)))).....- ( -29.90) >DroEre_CAF1 18553 86 - 1 AGGACACCCAAGGGCAU------GGUGAGUUUCGUUUCUCUGCUGUGGUUGAGUGACAAUUCG----UCAGGUGCCACUGUGCAAGUGGUACAUUU ..(((.((....))(((------((((((........))).))))))...((((....)))))----))..((((((((.....)))))))).... ( -26.90) >DroYak_CAF1 19810 83 - 1 AGGACAGGCAAGAGCAU------GGUGAGUUA-------CUGCUCUGGUUGAGUGACAACUCGUUUUUCAGGUGCCAUUCUGCAAGUGGCACAUUU (((((.(((.((((((.------(........-------))))))).)))((((....)))))))))....((((((((.....)))))))).... ( -26.80) >consensus AGGACAGCCAAAAGCAU______GGUGAGUUACGUUUUUCUGCUCUGGUUGAGUGACAACUCGUUUUUCAGGUGCCAUUGUGCAAGUGGCACAUUU ....((((((((.(((.....(((........))).....)))))))))))....................((((((((.....)))))))).... (-18.85 = -20.60 + 1.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:05 2006