Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,060,179 – 12,060,279 |
Length | 100 |
Max. P | 0.700924 |
Location | 12,060,179 – 12,060,279 |
---|---|
Length | 100 |
Sequences | 3 |
Columns | 100 |
Reading direction | forward |
Mean pairwise identity | 85.02 |
Mean single sequence MFE | -10.57 |
Consensus MFE | -10.50 |
Energy contribution | -10.50 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -0.12 |
Structure conservation index | 0.99 |
SVM decision value | 0.35 |
SVM RNA-class probability | 0.700924 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12060179 100 + 22224390 CUCUUCUGGUUUUUCUGAUGAAAACCAGUUCUGCCCAAUCCUCAAUCCCCAUACCCAAUCCCCAGUCCCCAAUCCCCAAUGCUCAAUGGUCCGUUUCGGU .....(((((((((.....)))))))))........................(((.(((..(((.....((........)).....)))...)))..))) ( -10.70) >DroSec_CAF1 91676 80 + 1 CUCUUCUGGUUUUUCUGAUGAAAACCAGUUCUGCCCAAUCCUCAGUCC-------------CCA-------AUCCCCAAUGCUCAAUGGUCCGUUUCGGU .....(((((((((.....)))))))))....................-------------...-------....(((........))).(((...))). ( -10.50) >DroSim_CAF1 69023 87 + 1 CUCUUCUGGUUUUUCUGAUGAAAACCAGUUCUGCCCAAUCCUCAAUCC-------------CCAAUCCCCAAUCCCCAAUGCUCAAUGGUCCGUUUCGGU .....(((((((((.....)))))))))....................-------------..............(((........))).(((...))). ( -10.50) >consensus CUCUUCUGGUUUUUCUGAUGAAAACCAGUUCUGCCCAAUCCUCAAUCC_____________CCA_UCCCCAAUCCCCAAUGCUCAAUGGUCCGUUUCGGU .....(((((((((.....)))))))))...............................................(((........))).(((...))). (-10.50 = -10.50 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:10 2006