Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,059,652 – 12,059,744 |
Length | 92 |
Max. P | 0.732141 |
Location | 12,059,652 – 12,059,744 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 92 |
Reading direction | forward |
Mean pairwise identity | 92.82 |
Mean single sequence MFE | -19.86 |
Consensus MFE | -15.48 |
Energy contribution | -15.80 |
Covariance contribution | 0.32 |
Combinations/Pair | 1.15 |
Mean z-score | -1.74 |
Structure conservation index | 0.78 |
SVM decision value | 0.43 |
SVM RNA-class probability | 0.732141 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12059652 92 + 22224390 UUUUCUCGGGACUCUCGCCCGCGUUUCCCCGCCACAAGAUCCCCCCGUUGUUCAUGUGGCACGCACUUCCCACUCAUAAAAACUGGAAACAU ......((((.......)))).((((((..((((((.((............)).))))))..(.......).............)))))).. ( -20.40) >DroSec_CAF1 91153 91 + 1 UUUUCUCGGGACUCCCGCCCGCGUUUCCCCGCCACAAGAUCC-CCCGUUGUUCAUGUGGCACGCACUUCCCACUCAUAAAAACUGGAAACAU ......((((.......)))).((((((..((((((.((...-........)).))))))..(.......).............)))))).. ( -20.50) >DroSim_CAF1 68499 92 + 1 UUUUCUCGGGACUCCCGCCCGCGUUUCCCCGCCACAAGAUCCCCCCGUUGUUCAUGUGGCACGCACUUCCCACUCAUAAAAACUGGAAACAU ......((((.......)))).((((((..((((((.((............)).))))))..(.......).............)))))).. ( -20.40) >DroEre_CAF1 88828 91 + 1 UUUUCCCUGCACUUUUGCCCGCGUUUUCCC-CCACAAGAUCCCCCCGUUGUUCAUGUGGCACGCACUACCCACUCAUAAAAACUGGGAACAU ..(((((.(((....)))..((((......-(((((.((............)).))))).))))....................)))))... ( -17.60) >DroYak_CAF1 91079 90 + 1 UUUUUUCGGGACUUUUGCCCGCGUUUUCC--CCACAAGAUCCCCCCGUUGUUCAUGUGGCACGCACUUCCCACUCAUAAAAACGGGAAACAU .......(((.(....))))((((.....--(((((.((............)).))))).))))..(((((............))))).... ( -20.40) >consensus UUUUCUCGGGACUCUCGCCCGCGUUUCCCCGCCACAAGAUCCCCCCGUUGUUCAUGUGGCACGCACUUCCCACUCAUAAAAACUGGAAACAU .(((((.(((.......)))((((......((((((.((............)).))))))))))....................)))))... (-15.48 = -15.80 + 0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:09 2006