Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,056,327 – 12,056,437 |
Length | 110 |
Max. P | 0.872852 |
Location | 12,056,327 – 12,056,437 |
---|---|
Length | 110 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 80.25 |
Mean single sequence MFE | -24.92 |
Consensus MFE | -13.94 |
Energy contribution | -17.18 |
Covariance contribution | 3.25 |
Combinations/Pair | 1.00 |
Mean z-score | -2.44 |
Structure conservation index | 0.56 |
SVM decision value | 0.88 |
SVM RNA-class probability | 0.872852 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12056327 110 + 22224390 UUGUUAAACGCAUGCAUACAUAAAAUGUAUAUUUGUGCACUUUGUAAACAAAAAUCAAAUAGGCAUAUUAUCUAAUA----------UUGCCAUAAAUGCGUAUUAGCGUGCGAUUAAUA .((((((.((((((((((((((((.(((((....))))).)))))................((((((((....))))----------.))))........))))..))))))).)))))) ( -28.00) >DroSec_CAF1 87958 119 + 1 UUGUUAAACGCAUGCAUACAUAAAAUGUAUAUUUGUGCACAUUGUAAACAA-AAUCAAAUAGCCAUAUUAUCUAAUAUGAUUUUGCGUUGCCAUAAAUGCAUAUUAGCGUGCGAUUAAUA .((((((.(((((((((((((...))))))...((((((.((.((((.(((-(((((..(((.........)))...))))))))..)))).))...))))))...))))))).)))))) ( -30.00) >DroEre_CAF1 85625 115 + 1 UUGUUAAACGCACGCAUUCAUAAA----AUGUAUGAGCACUUUGUAAACAA-AAUCAAAUAGGCAUAUUAUCUGAUUUGAUUUUAGGUUGCCAUAAAUGCUUAUUUGCAUGGGAUUAAUA .((((((.(.((.(((........----....(((((((.(((((.(((.(-(((((((((((.......))).)))))))))...)))...)))))))))))).))).)).).)))))) ( -22.42) >DroYak_CAF1 87832 108 + 1 UUGUUAAACGCACGCAGUCAUAAA-UGUAUAUUUGUGCAGUUUGUAAACAA-AAUCAAAUAGGCAUAAC----------AUUUUCCGUUUCCCUAAAUGCUUAAUAGCAUGGGAUUAAUA .((((((....(((.........(-(((.((((((.....((((....)))-)..)))))).))))...----------......))).((((...(((((....))))))))))))))) ( -19.27) >consensus UUGUUAAACGCACGCAUACAUAAA_UGUAUAUUUGUGCACUUUGUAAACAA_AAUCAAAUAGGCAUAUUAUCUAAUA__AUUUU_CGUUGCCAUAAAUGCUUAUUAGCAUGCGAUUAAUA .((((((.(((((((....(((((.(((((....))))).)))))............(((((((((..............................))))))))).))))))).)))))) (-13.94 = -17.18 + 3.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:06 2006