Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 207,207 – 207,311 |
Length | 104 |
Max. P | 0.798558 |
Location | 207,207 – 207,311 |
---|---|
Length | 104 |
Sequences | 4 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 91.71 |
Mean single sequence MFE | -22.70 |
Consensus MFE | -19.60 |
Energy contribution | -19.47 |
Covariance contribution | -0.13 |
Combinations/Pair | 1.10 |
Mean z-score | -1.70 |
Structure conservation index | 0.86 |
SVM decision value | 0.61 |
SVM RNA-class probability | 0.798558 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 207207 104 + 22224390 UUUUGUAUAUGGUAGCCAAAUAUUUAUCUG-GCAUUACGUUAUUUGUUGAGGCCAUUUAAACAAAAUGAUGUCAAGAGUAAUGAAUGCAGUCAAUAAAUAUGUAC ....((((.(((...))).((((((((...-(((((.((((((((.((((.(.(((((.....))))).).))))))))))))))))).....)))))))))))) ( -22.10) >DroSec_CAF1 2300 104 + 1 U-UUGUAUAUGCUAGCCAAAUAUUUAUCUGGGCAUUACGUUAUUUGUUGAGGCCAUUUUCACAAAAUGAUGUCAAGAGUAAUGAAUGCAGUAAAUAAAUAUGUAC .-..(((((((....(((.((....)).)))(((((.((((((((.((((.(.(((((.....))))).).)))))))))))))))))..........))))))) ( -22.20) >DroEre_CAF1 3055 104 + 1 UUUUGUAUAUGCAAGCCAAAUAUUUACCUG-GCAUUAUAUUAUUUGUUGAGGCCAUUUGAACAAAAUGAUGUCAAGAGUAAUGGAUGCAGUAUAUAAAUAUGUAC .((((((((((((.((((..........))-))....((((((((.((((.(.(((((.....))))).).))))))))))))..)))).))))))))....... ( -24.30) >DroYak_CAF1 2270 104 + 1 UUUUGUUCAUGCAAGCCAAAUAUUUAUCCG-GCAAUACGUUAUUUGUUGAGGCCAUUUGAACAAAAUGAUGUCAAGAGUAAUGGAUGCAGUAAAUAAAUAUGUAC .((((((..((((.(((............)-))....((((((((.((((.(.(((((.....))))).).))))))))))))..))))...))))))....... ( -22.20) >consensus UUUUGUAUAUGCAAGCCAAAUAUUUAUCUG_GCAUUACGUUAUUUGUUGAGGCCAUUUGAACAAAAUGAUGUCAAGAGUAAUGAAUGCAGUAAAUAAAUAUGUAC ...................((((((((....(((((.((((((((.((((.(.(((((.....))))).).))))))))))))))))).....)))))))).... (-19.60 = -19.47 + -0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:15 2006