Locus 4598

Sequence ID X_DroMel_CAF1
Location 12,045,137 – 12,045,240
Length 103
Max. P 0.576934
window7560

overview

Window 0

Location 12,045,137 – 12,045,240
Length 103
Sequences 4
Columns 107
Reading direction forward
Mean pairwise identity 92.75
Mean single sequence MFE -22.30
Consensus MFE -20.69
Energy contribution -21.00
Covariance contribution 0.31
Combinations/Pair 1.04
Mean z-score -1.34
Structure conservation index 0.93
SVM decision value 0.09
SVM RNA-class probability 0.576934
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12045137 103 + 22224390
CCAGUUGUGUUGAUGCCCGCAGCUGAAUUCGCCAAAGAAUUCGAUACUCAUACGCAUUAAACCCAAUGAAAUUCGAGUGCAGA----AAGCACCGAAAAAAAGCCAA
...((((..(((((((........((((((......))))))(.....)....)))))))...))))....((((.((((...----..)))))))).......... ( -23.40)
>DroSec_CAF1 77088 104 + 1
CCAGUUGUGUUGAUGCCCGCAGCUGAAUUCGCCA-AGAAUUCGAUACUC-UACGCAUUAAACCCAAUGAAAUUCGAGUGCAGAAAGAAAGCACCGAAA-AAAGCCAA
...((((..(((((((....((.(((((((....-.)))))))...)).-...)))))))...))))....((((.((((.........)))))))).-........ ( -22.80)
>DroEre_CAF1 74569 100 + 1
CCAGUUGUUAUGAUGCCCGCAGCUGAAUUCGCCA-AGAAUUCGAUACUC-UUCGCAUUAAACCCAGUGAAAUUCGAGUGCAUA----AAGCACCGAAA-AAAGCCAA
......(((.((((((........((((((....-.))))))((.....-.)))))))))))...((....((((.((((...----..)))))))).-...))... ( -22.20)
>DroYak_CAF1 76742 100 + 1
CCAGUUGUUAUGAUGACCGCAGCUGAAUUCGCUA-AGAAUUCGAUACUC-UUCGCAUUAAACCCAAUGAAAUUCGAGUGCAGA----AAGCACCGAAA-AAAGCCAA
.(((((((..........))))))).....(((.-..(((.(((.....-.))).))).............((((.((((...----..)))))))).-..)))... ( -20.80)
>consensus
CCAGUUGUGAUGAUGCCCGCAGCUGAAUUCGCCA_AGAAUUCGAUACUC_UACGCAUUAAACCCAAUGAAAUUCGAGUGCAGA____AAGCACCGAAA_AAAGCCAA
..(((((((........)))))))((((((......))))))............((((......))))...((((.((((.........)))))))).......... (-20.69 = -21.00 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:04 2006