Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,044,682 – 12,044,791 |
Length | 109 |
Max. P | 0.963874 |
Location | 12,044,682 – 12,044,791 |
---|---|
Length | 109 |
Sequences | 3 |
Columns | 116 |
Reading direction | forward |
Mean pairwise identity | 71.76 |
Mean single sequence MFE | -22.10 |
Consensus MFE | -13.40 |
Energy contribution | -12.20 |
Covariance contribution | -1.20 |
Combinations/Pair | 1.42 |
Mean z-score | -1.81 |
Structure conservation index | 0.61 |
SVM decision value | 1.56 |
SVM RNA-class probability | 0.963874 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12044682 109 + 22224390 UUUGGAAACGAAUGCUGAAGUUUUAGUAUUUAAAGAGAUAUUUCUUCAAAGAUUUCAGCUUU-------UUUUUUUAAAUAUAUAGGUUUUUGUUAGGUUUCGGAAAUGUGAAACU ((((((((.(((.((((((((((((((((((....)))))))......))))))))))).))-------).)))))))).................(((((((......))))))) ( -22.10) >DroSec_CAF1 76643 104 + 1 U-CAGAAACGAAUGCUGAAGUUUUAUUGCAUUAAGAUAUAUUCCUUCAGGAAUUUCAGU----------UUGUUUUAAAUAUAAA-GUUUUUGUUAGGUUUCGAAAACAUAAAACU .-..(((((((..((((((((((((......))))))..(((((....)))))))))))----------))))))).........-(((((((........)))))))........ ( -21.30) >DroEre_CAF1 74097 115 + 1 U-UAGAAACGAAUGUUGGAAUUUAAGUAUUUUUAUGGAUAUCCCGUCAAAGAUUUCAGCUUGUUCUAAUAUUUCAAAAAUACAUACGUUUUUGUUAGGUUUCCUAAAAAUAAAACU .-..(((((((((((((((((..((((((((((((((.....)))).))))))....))))))))))))))))(((((((......)))))))....))))).............. ( -22.90) >consensus U_UAGAAACGAAUGCUGAAGUUUUAGUAUUUUAAGAGAUAUUCCUUCAAAGAUUUCAGCUU________UUUUUUUAAAUAUAUA_GUUUUUGUUAGGUUUCGAAAAAAUAAAACU ....(((((....((((((((((((((((((....)))))))......))))))))))).....................(((........)))...))))).............. (-13.40 = -12.20 + -1.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:03 2006