Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,032,128 – 12,032,223 |
Length | 95 |
Max. P | 0.956809 |
Location | 12,032,128 – 12,032,223 |
---|---|
Length | 95 |
Sequences | 5 |
Columns | 96 |
Reading direction | forward |
Mean pairwise identity | 88.53 |
Mean single sequence MFE | -22.11 |
Consensus MFE | -18.37 |
Energy contribution | -18.37 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.00 |
Structure conservation index | 0.83 |
SVM decision value | 1.47 |
SVM RNA-class probability | 0.956809 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12032128 95 + 22224390 ACACCAAAGCCGCAGCGCCAAACUUCAAAAUGGCUGCCUUUGGUGGCCAUUGGAUUCGCCCUUUUUUUUUUUUGGUUUUGUUGU-CCCCAGUUUUG ....((((((.(((((((((((......((((((..((...))..))))))((......)).........))))))...)))))-.....)))))) ( -25.80) >DroSec_CAF1 64208 80 + 1 ACACCAAAGCCGCAGCGCCAAACUUCAAAAUGGCUGCCUUUGGUGGCCAUUGGAUUCGCCUUUUUU----------------GUCCCUCAGUUUUC .((((((((..(((((................)))))))))))))......((((...........----------------)))).......... ( -20.29) >DroSim_CAF1 62904 80 + 1 ACACCAAAGCCGCAGCGCCAAACUUCAAAAUGGCUGCCUUUGGUGGCCAUUGGAUUCGCCUUUUUU----------------GUCCCUCAGUUUUC .((((((((..(((((................)))))))))))))......((((...........----------------)))).......... ( -20.29) >DroEre_CAF1 61940 79 + 1 ACACCAAAGCCGCAGCGCCAAACUUCAAAAUGGCUGCCUUUGGUGGCCAUCGGAUUCGCCUUUUUU----------------GUCC-CCAGUUUUC .((((((((..(((((................)))))))))))))......((((...........----------------))))-......... ( -20.59) >DroYak_CAF1 64078 79 + 1 ACACCAAAGCCGCAGCGCCAAACUUCAAAAUGGCUGCCUUUGGUGGCCAUUGGAUUCGCCUUUUUU----------------GUUU-CCAGUUUUC .((((((((..(((((................)))))))))))))...((((((..((.......)----------------)..)-))))).... ( -23.59) >consensus ACACCAAAGCCGCAGCGCCAAACUUCAAAAUGGCUGCCUUUGGUGGCCAUUGGAUUCGCCUUUUUU________________GUCCCCCAGUUUUC .((((((((..(((((................)))))))))))))......((.....)).................................... (-18.37 = -18.37 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:01 2006