Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,025,208 – 12,025,302 |
Length | 94 |
Max. P | 0.991817 |
Location | 12,025,208 – 12,025,302 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 106 |
Reading direction | forward |
Mean pairwise identity | 75.28 |
Mean single sequence MFE | -16.50 |
Consensus MFE | -8.06 |
Energy contribution | -9.90 |
Covariance contribution | 1.84 |
Combinations/Pair | 1.07 |
Mean z-score | -2.47 |
Structure conservation index | 0.49 |
SVM decision value | 2.29 |
SVM RNA-class probability | 0.991817 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12025208 94 + 22224390 CAUUUCACUGGCUCACAU-UUCUUUCU-------CCAAAUUGUUAAAAUGGAGCAUGCAAAAUAAUUGCGUGCACCCCGCAAACA-CCCACGCCCCCAUUUCA--- .........(((......-.......(-------(((...........))))((((((((.....))))))))............-.....))).........--- ( -17.60) >DroSec_CAF1 57526 96 + 1 CAUUAAACUGGCUCACAU-UUCUUUCU-------CCAAAUUGUUAAAAUGGAGCAUGCAAAAUAAUUGCGUGCACCCCGCA-ACA-CCCACGCCACCAUUUCACUC ........((((......-.......(-------(((...........))))((((((((.....))))))))........-...-.....))))........... ( -19.00) >DroSim_CAF1 56126 96 + 1 CAUUUCACUGGCUCACAU-UUCUUUUU-------CCAAAUUGUUAAAAUGGAGCAUGCAAAAUAAUUGCGUGCACCCCGCA-ACA-CCCACGCCACCAUUUCACUC ........((((......-.......(-------(((...........))))((((((((.....))))))))........-...-.....))))........... ( -19.10) >DroEre_CAF1 53876 96 + 1 CAUUUCACUGGCUCACAU-UUCUUUCU-------CCAAAUUGUUAAAAUGGAGCAUGCAAAAUAAUUGCGUGCACCCCGCA-GCACCCCACGCCCCCAUUUAC-CG .........(((......-.......(-------(((...........))))((((((((.....))))))))........-.........))).........-.. ( -17.60) >DroPer_CAF1 162341 101 + 1 CAUUUCACCCGCUCACUUUUUCUUUCUCCUUCCCCGGAAUUGUUAAAAUGGAGCAUGCAAAAUAAUUUNNNNNNNNNNNNN-NNN----NNNNNNNNNNNNNNNNN ..........((((..((((......(((......)))......))))..))))...........................-...----................. ( -9.20) >consensus CAUUUCACUGGCUCACAU_UUCUUUCU_______CCAAAUUGUUAAAAUGGAGCAUGCAAAAUAAUUGCGUGCACCCCGCA_ACA_CCCACGCCACCAUUUCA___ .........(((......................(((...........))).((((((((.....))))))))..................)))............ ( -8.06 = -9.90 + 1.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:28:56 2006