Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,025,060 – 12,025,150 |
Length | 90 |
Max. P | 0.809558 |
Location | 12,025,060 – 12,025,150 |
---|---|
Length | 90 |
Sequences | 5 |
Columns | 92 |
Reading direction | reverse |
Mean pairwise identity | 91.55 |
Mean single sequence MFE | -22.00 |
Consensus MFE | -17.30 |
Energy contribution | -17.38 |
Covariance contribution | 0.08 |
Combinations/Pair | 1.09 |
Mean z-score | -1.77 |
Structure conservation index | 0.79 |
SVM decision value | 0.64 |
SVM RNA-class probability | 0.809558 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12025060 90 - 22224390 AGUGGAAAGUGGGGCAUUAAAGCCUAGAAUCCGACAUUUUCAUAUGCAUGCUUAAAUACGUCGA--GUACGAAGGCAACAACAUUCACAUUC .((((((((((((((......)))).(....)..))))))).......(((((...(((.....--)))...)))))........))).... ( -19.00) >DroSec_CAF1 57376 92 - 1 AGUGGAAAGUGGGGCAUUAAAGCCUAGAAUCCGACAUUUUCAUAUGCAUGCUUAAGUACGUCGACUGUACGAAAGCAACAACAUUCACAUUC .((((((((((((((......)))).(....)..))))))).......(((((..(((((.....)))))..)))))........))).... ( -23.40) >DroSim_CAF1 55976 92 - 1 AGUGGAAAGUGGGGCAUUAAAGCCUAGAAUCCGACAUUUUCAUAUGCAUGCUUAAGUACGUCGAGUGUACGAAAGCAGCAACAUUCACAUUC .((((((((((((((......)))).(....)..)))))))...(((.(((((..(((((.....)))))..)))))))).....))).... ( -27.30) >DroEre_CAF1 53736 82 - 1 AGUGGAAAGUGGGGCAUUAAAGCCUAGAAUCCGACAUUUUCAUAUGCAUGCUUAAGUACGUCGA--GUACGAAAGCAACAACA---G----- ....(((((((((((......)))).(....)..))))))).......(((((..((((.....--))))..)))))......---.----- ( -20.90) >DroYak_CAF1 57018 87 - 1 AGUGGAAAGUGGGGCAUUAAAGCAUAGAAUCCGACAUUUUCAUAUGCAUGCUUAAGUACGUCGA--GUACGAAAGCAACAACA---ACAUCU .(((((((((.(((..(((.....)))..))).)).))))))).....(((((..((((.....--))))..)))))......---...... ( -19.40) >consensus AGUGGAAAGUGGGGCAUUAAAGCCUAGAAUCCGACAUUUUCAUAUGCAUGCUUAAGUACGUCGA__GUACGAAAGCAACAACAUUCACAUUC .((.(((((((((((......)))).(....)..))))))).......(((((..((((.......))))..)))))))............. (-17.30 = -17.38 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:28:55 2006