Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,023,968 – 12,024,072 |
Length | 104 |
Max. P | 0.966486 |
Location | 12,023,968 – 12,024,072 |
---|---|
Length | 104 |
Sequences | 5 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 97.50 |
Mean single sequence MFE | -19.62 |
Consensus MFE | -19.28 |
Energy contribution | -19.08 |
Covariance contribution | -0.20 |
Combinations/Pair | 1.08 |
Mean z-score | -1.50 |
Structure conservation index | 0.98 |
SVM decision value | 1.60 |
SVM RNA-class probability | 0.966486 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12023968 104 - 22224390 AUUUACCAUUUUCCUACUUCCUCCAGCAUCGCAAGCACUUCCUGAGCCGCUGCGUCAUCAUCAGCGUUGUUUUAUAGAUAAAACAGCGUUACAGCUCCAA-AUUU ........................(((..((((.((.(((...)))..))))))........((((((((((((....))))))))))))...)))....-.... ( -20.60) >DroSec_CAF1 56306 103 - 1 AUUUACCAUUUUCC-ACUUCCUCCAGCAUCGCAAGCACUUCCUGAGCCGCUGCGUCAUCAUCAGCGUUGUUUUAUAGAUAAAGCAGCGUUACAGCUCCAA-AUUU ..............-.........(((..((((.((.(((...)))..))))))........((((((((((((....))))))))))))...)))....-.... ( -20.60) >DroSim_CAF1 54909 103 - 1 AUUUACCAUUUUCC-ACUUCCUCCAGCAUCGCAAGCACUUCCUGAGCCGCUGCGUCAUCAUCAGCGUUGUUUUAUAGAUAAAGCAGCGUUACAGCUCCAA-AUUU ..............-.........(((..((((.((.(((...)))..))))))........((((((((((((....))))))))))))...)))....-.... ( -20.60) >DroEre_CAF1 52647 104 - 1 AUUUACCAUUUUCC-ACUUCCUCCAGCAUCGCAAGCACUUCCUGAGCCGCUCCGUCAUCAUCAGCGUUGUUUUAUAGAUAAAACAGCGUUACAGCUCCAAAAUUU ..............-.........(((...((..((.(.....).)).))............((((((((((((....))))))))))))...)))......... ( -16.80) >DroYak_CAF1 54159 103 - 1 AUUUACCAUUUUCC-ACUUCCUCCAGCAUCGCAAGCACUUCCUGAGCCGCUGUGCCAUCAUCAGCGUUGUUUUAUAGAUAAAGCAGCGUUACAGCUCCAA-AUUU ..............-.........(((...((((((.(((...)))..))).))).......((((((((((((....))))))))))))...)))....-.... ( -19.50) >consensus AUUUACCAUUUUCC_ACUUCCUCCAGCAUCGCAAGCACUUCCUGAGCCGCUGCGUCAUCAUCAGCGUUGUUUUAUAGAUAAAGCAGCGUUACAGCUCCAA_AUUU ........................(((..((((.((.(((...)))..))))))........((((((((((((....))))))))))))...)))......... (-19.28 = -19.08 + -0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:28:54 2006