Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,023,773 – 12,023,868 |
Length | 95 |
Max. P | 0.958888 |
Location | 12,023,773 – 12,023,868 |
---|---|
Length | 95 |
Sequences | 4 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 83.22 |
Mean single sequence MFE | -31.25 |
Consensus MFE | -21.98 |
Energy contribution | -22.29 |
Covariance contribution | 0.31 |
Combinations/Pair | 1.17 |
Mean z-score | -2.09 |
Structure conservation index | 0.70 |
SVM decision value | 0.93 |
SVM RNA-class probability | 0.884748 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12023773 95 + 22224390 UUUAGUUGCCAUUAAAUGGCAUC----------CCACCCAAAAAACUACGCCCCUGACUCACUUACAUGGGUGUUGUUAUUUCCAGGGGCUGUU---UUUCAACGGGG ......((((((...)))))).(----------((.....((((((...(((((((((.(((((....)))))..))......))))))).)))---))).....))) ( -29.90) >DroSec_CAF1 56120 94 + 1 UUUAGUUGCCAUUAAAGGGCGCC----------CCUCCCGA-AAACUACGCCCCUGCCUCACUUACAUGGGUGUUGUUAUUUCCAGGGGCUGUU---UUUCCAGGGGG .......(((.......))).((----------(((...((-((((...((((((((..(((((....)))))..).......))))))).)))---)))..))))). ( -32.41) >DroSim_CAF1 54723 94 + 1 UUUAGUUGCCAUUAAAGGGCGCC----------CCUCCCGA-AAACUACGCCCCUGCCUCACUUACAUGGGUGUUGUUAUUUCCAGGGGCUGUU---UUUACAAGGGG .......(((.......))).((----------(((...((-((((...((((((((..(((((....)))))..).......))))))).)))---)))...))))) ( -31.41) >DroYak_CAF1 53940 107 + 1 UUUAGUCGCCAUUAAGAGGUGCCUCCCCACCCCCCCCCCGCGAAACUACGCCCCUGACUCACUUACAUGGGUGUUGUUAUUUCCAGGGGCUGUUAUUUCCAUAGG-GG ...((.((((.......)))).))...........((((..((((..(((((((((((.(((((....)))))..))......))))))).))..))))....))-)) ( -31.30) >consensus UUUAGUUGCCAUUAAAGGGCGCC__________CCUCCCGA_AAACUACGCCCCUGACUCACUUACAUGGGUGUUGUUAUUUCCAGGGGCUGUU___UUUACAGGGGG ......((((.......)))).............(((((........(((((((((...(((((....)))))..........))))))).))..........))))) (-21.98 = -22.29 + 0.31)
Location | 12,023,773 – 12,023,868 |
---|---|
Length | 95 |
Sequences | 4 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 83.22 |
Mean single sequence MFE | -35.50 |
Consensus MFE | -21.59 |
Energy contribution | -22.65 |
Covariance contribution | 1.06 |
Combinations/Pair | 1.15 |
Mean z-score | -2.96 |
Structure conservation index | 0.61 |
SVM decision value | 1.49 |
SVM RNA-class probability | 0.958888 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12023773 95 - 22224390 CCCCGUUGAAA---AACAGCCCCUGGAAAUAACAACACCCAUGUAAGUGAGUCAGGGGCGUAGUUUUUUGGGUGG----------GAUGCCAUUUAAUGGCAACUAAA (((..(..(((---(((.((((((((.....((.(((....)))..))...))))))))...))))))..)..))----------).((((((...))))))...... ( -33.50) >DroSec_CAF1 56120 94 - 1 CCCCCUGGAAA---AACAGCCCCUGGAAAUAACAACACCCAUGUAAGUGAGGCAGGGGCGUAGUUU-UCGGGAGG----------GGCGCCCUUUAAUGGCAACUAAA (((((((((((---....((((((((......)....(((((....))).)))))))))....)))-))))).))----------)..(((.......)))....... ( -35.80) >DroSim_CAF1 54723 94 - 1 CCCCUUGUAAA---AACAGCCCCUGGAAAUAACAACACCCAUGUAAGUGAGGCAGGGGCGUAGUUU-UCGGGAGG----------GGCGCCCUUUAAUGGCAACUAAA ((((((.(.((---(((.((((((((......)....(((((....))).)))))))))...))))-).).))))----------)).(((.......)))....... ( -33.50) >DroYak_CAF1 53940 107 - 1 CC-CCUAUGGAAAUAACAGCCCCUGGAAAUAACAACACCCAUGUAAGUGAGUCAGGGGCGUAGUUUCGCGGGGGGGGGGUGGGGAGGCACCUCUUAAUGGCGACUAAA ((-((..(((((.((...((((((((.....((.(((....)))..))...)))))))).)).)))))..))))(((((((......))))))).............. ( -39.20) >consensus CCCCCUGGAAA___AACAGCCCCUGGAAAUAACAACACCCAUGUAAGUGAGGCAGGGGCGUAGUUU_UCGGGAGG__________GGCGCCCUUUAAUGGCAACUAAA ((.((((((((....((.((((((((......)..(((........)))...)))))))))...)))))))).)).............(((.......)))....... (-21.59 = -22.65 + 1.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:28:53 2006