Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,020,463 – 12,020,562 |
Length | 99 |
Max. P | 0.873010 |
Location | 12,020,463 – 12,020,562 |
---|---|
Length | 99 |
Sequences | 3 |
Columns | 101 |
Reading direction | reverse |
Mean pairwise identity | 96.01 |
Mean single sequence MFE | -35.73 |
Consensus MFE | -32.13 |
Energy contribution | -32.80 |
Covariance contribution | 0.67 |
Combinations/Pair | 1.00 |
Mean z-score | -2.39 |
Structure conservation index | 0.90 |
SVM decision value | 0.88 |
SVM RNA-class probability | 0.873010 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12020463 99 - 22224390 --AAUUUGAACUAUGCCAUGCACAUGUUUUGCUAGCCACUAGUUUCGGCAUGUGUCUGAGGCCAUGUCGGAAAUGCGAGCAUGUGGGUGGUGGCAUGUUGA --......(((..((((((.(((((((((.(((((...)))))(((((((((.((.....))))))))))).....))))))))).))))))....))).. ( -36.30) >DroEre_CAF1 50917 99 - 1 --AAUUUGCACAAUGCCAGGCACAUGUUUUGCUAGCCACUAGUUUCGGCAUGUGUCUGAGGCCAUGUCGGAAAUGCGAGCAUGUGGGUGGUGGCAUGUUGA --(((.(((.....((((..(((((((((.(((((...)))))(((((((((.((.....))))))))))).....)))))))))..)))).))).))).. ( -34.00) >DroYak_CAF1 52097 101 - 1 UGAAUUUGAACUAUGCCAGGCACAUGUUUUGCUAGCCACUAGUUUCGGCAUGUGUCUGAGGCCAUGUCGGAAAUGCGACCAUGUGGGUGGUGGCAUGUUGA ....(((((.....((((((((((((((..(((((...)))))...)))))))))))..)))....))))).((((.(((((....))))).))))..... ( -36.90) >consensus __AAUUUGAACUAUGCCAGGCACAUGUUUUGCUAGCCACUAGUUUCGGCAUGUGUCUGAGGCCAUGUCGGAAAUGCGAGCAUGUGGGUGGUGGCAUGUUGA ........(((.(((((((((....)))).((((.((((...((((((((((.((.....))))))))))))(((....))))))).)))))))))))).. (-32.13 = -32.80 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:28:49 2006