Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,017,475 – 12,017,595 |
Length | 120 |
Max. P | 0.914996 |
Location | 12,017,475 – 12,017,595 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 95.50 |
Mean single sequence MFE | -29.84 |
Consensus MFE | -27.08 |
Energy contribution | -26.88 |
Covariance contribution | -0.20 |
Combinations/Pair | 1.07 |
Mean z-score | -1.45 |
Structure conservation index | 0.91 |
SVM decision value | 1.10 |
SVM RNA-class probability | 0.914996 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12017475 120 - 22224390 GUCCCGCAUCGGGUGUUUGUUCCAAUAAUGUUUUUAUUAUACCAACUACACUCGAUUGUCAGUGGUGAAUGUUAAUUGCUGACGGAAUAACAUAGCUACCGUAUGGAUUUAAUUGCUUAC ((((.((.((((((((..(((...((((((....))))))...))).))))))))(((((((..((........))..)))))))...............))..))))............ ( -29.90) >DroSec_CAF1 50932 120 - 1 GUCCCGCAUCGGAUGUUUGUUCCAAUAAUGUUUUUAUUAUACCAACUACACUCGAUUGUCAGUGGUGAAUGUUAAUUGCUGACGGAAUAACACAGCUACCGUUUGGAUUUAAUUGCUUAC ((((.....(((.((((((((((.((((((....)))))).................(((((..((........))..)))))))))))).)))....)))...))))............ ( -28.60) >DroSim_CAF1 50125 120 - 1 GUCCCGCAUCGGGUGUUUGUUCCAAUAAUGUUUUUAUUAUACCAACUACACUCGAUUGUCAGUGGUGAAUGUUAAUUGCUGACGGAAUAACACGGCUACCGUAUGGAUUUAAUUGCUUAC .(((...(((((((((..(((...((((((....))))))...))).))))))))).(((((..((........))..)))))))).....((((...)))).................. ( -31.50) >DroEre_CAF1 48035 120 - 1 GCCCCGCAUCGGGUGUUUGUUCCAAUAAUGUUUUUAUUAUACCAACUAUACUCGAUUGUCAGUGGUGAAUGUUAAUUGCUGACGGAAUAACACGACUACCGUAUGGAUUCAAUUGCUUGC .....(((((((((((..(((...((((((....))))))...))).)))))))).((((((..((........))..))))))((((...(((.....)))....))))...))).... ( -29.70) >DroYak_CAF1 49121 120 - 1 ACCCCGCAUCGGGUGUUUGUUCCAAUAAUGUUUUUAUUAUACCAACUAUACUCGAUUGUCAGUGGUGAAUGUUAAUUGCUGAUGGAAUAACACGGCUACCGUAUGCAUUUAAUUGCUUAC .....((((((((((((.(((((.((((((....)))))).................(((((..((........))..))))))))))))))).....))).)))).............. ( -29.50) >consensus GUCCCGCAUCGGGUGUUUGUUCCAAUAAUGUUUUUAUUAUACCAACUACACUCGAUUGUCAGUGGUGAAUGUUAAUUGCUGACGGAAUAACACGGCUACCGUAUGGAUUUAAUUGCUUAC .....(((((((((((..(((...((((((....))))))...))).))))))))(((((((..((........))..)))))))............................))).... (-27.08 = -26.88 + -0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:28:44 2006