Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,015,754 – 12,015,851 |
Length | 97 |
Max. P | 0.552474 |
Location | 12,015,754 – 12,015,851 |
---|---|
Length | 97 |
Sequences | 5 |
Columns | 106 |
Reading direction | reverse |
Mean pairwise identity | 90.60 |
Mean single sequence MFE | -33.34 |
Consensus MFE | -27.44 |
Energy contribution | -27.56 |
Covariance contribution | 0.12 |
Combinations/Pair | 1.11 |
Mean z-score | -1.33 |
Structure conservation index | 0.82 |
SVM decision value | 0.04 |
SVM RNA-class probability | 0.552474 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12015754 97 - 22224390 GUG---AAAAGUAUG------UUUUCAAGUGAGCUUUACUGUACCAUCCGCCCGAAAGAAGGCGUGGAACGGCAAAGCUGGCUCCCAAGUCAUUAGGACUAAUGGC .((---((((.....------))))))(((.((((((.((((.(((..(((((....)..))))))).)))).)))))).))).....(((((((....))))))) ( -33.30) >DroSec_CAF1 49233 103 - 1 GUG---AAAAGUCUGCAUGCCUAUUCAACUGAGCUUUACUGUACCAUCCGCCCGAAAGAAGGCGUGGAGCGGCAAAGCUGGCUCCCAAGUCAUUAGGACUAAUGGC ...---....(((......((((........((((((.((((.(((..(((((....)..))))))).)))).))))))((((....))))..))))......))) ( -29.90) >DroSim_CAF1 48426 103 - 1 GUG---AAAAGUCUGCGUGCGUAUUCAAGUGAGCUUUACUGUACCAUCCGCCCGAAAGAAGGCGUGGAGCGGCAAAGCUGGCUCCCAAGUCAUUAGGACUAAUGGC ...---...(((((..((((.......(((.((((((.((((.(((..(((((....)..))))))).)))).)))))).))).....).)))..)))))...... ( -32.60) >DroEre_CAF1 46339 103 - 1 GUG---GAAAGUCUGCAAGCGCUGUCAGCUGGGCUUUACUGUACCAUCCGCCCGAAAGAAGGCGUGGAGCGGCAAAGCUGGCUCCCAAGUCAUUAGGACUAAUGGC .((---(..((((....(((.......))).((((((.((((.(((..(((((....)..))))))).)))).)))))))))).))).(((((((....))))))) ( -34.80) >DroYak_CAF1 47400 106 - 1 GUGCUGCAAAGUCUGCAUGCGCUUUCAAGUGAGCUUUACUGUACCAUCCGCCAGAAAGAAGGCGUGGAGCGACAAAGCUGGCUCCCAAGUCAUUAGGACUAAUGGC ((((((((.....)))).)))).....(((.((((((..(((.(((..((((........))))))).)))..)))))).))).....(((((((....))))))) ( -36.10) >consensus GUG___AAAAGUCUGCAUGCGUUUUCAAGUGAGCUUUACUGUACCAUCCGCCCGAAAGAAGGCGUGGAGCGGCAAAGCUGGCUCCCAAGUCAUUAGGACUAAUGGC ...........................(((.((((((.((((.(((..((((........))))))).)))).)))))).))).....(((((((....))))))) (-27.44 = -27.56 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:28:43 2006