Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,012,899 – 12,012,996 |
Length | 97 |
Max. P | 0.511727 |
Location | 12,012,899 – 12,012,996 |
---|---|
Length | 97 |
Sequences | 5 |
Columns | 98 |
Reading direction | forward |
Mean pairwise identity | 88.40 |
Mean single sequence MFE | -22.32 |
Consensus MFE | -18.38 |
Energy contribution | -18.58 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.00 |
Mean z-score | -1.36 |
Structure conservation index | 0.82 |
SVM decision value | -0.04 |
SVM RNA-class probability | 0.511727 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12012899 97 + 22224390 GAAGUGUCAACAGCGUCGUCAUCAUGAUGCAUGGCACCCGGCACUAUCUUCCUUGGGUUAAGCCCAACUGCAGCCCU-UUCACCUCCCACUUUUGCCC ...((((((...(((((((....))))))).))))))..((((...........(((((.((.....))..))))).-...............)))). ( -22.93) >DroSec_CAF1 46412 97 + 1 GAAGUGUCAACAGCGUCGUCAUCAUGAUGCAUGGCACCCAGCACUAUUUUCCUUGGGUUAAGCCCAACUGCACCCCU-UGCUCCACCCACAUUUGCCC ...((((((...(((((((....))))))).))))))...(((.........(((((.....)))))..(((.....-)))............))).. ( -23.60) >DroSim_CAF1 45610 98 + 1 GAAGUGUCAACAGCGUCGUCAUCAUGAUGCAUGGCACCCAGCACUAUCUUCCUUGGGUUAAGCCCAACUGCACCCAUGUGCACCACCCACAUUUGUCC ...((((((...(((((((....))))))).))))))...((((........(((((.....)))))..........))))................. ( -25.57) >DroEre_CAF1 43125 92 + 1 GAAGUGUCAACAGCGUCGUCAUCAUGAUGCAUGGCACCCAGCACUAUCU-CCCUGGGUUAAGCCCAACUGC--CCCC-UUUCCCGCCCACUCUUAC-- ..((((......(((((((....)))))))..(((((((((........-..))))))...((......))--....-......))))))).....-- ( -22.20) >DroYak_CAF1 44199 97 + 1 GAAGUGUCAACAGCGUCGUCAUCAUGAUGCAUGGCACCCAGCACUAUCUUCCCUCGGUUAAGCCCAACUGCACCCCC-UUCUCUGCCUACCUUUAUCC ...((((((...(((((((....))))))).))))))...(((...........(((((......))))).......-.....)))............ ( -17.30) >consensus GAAGUGUCAACAGCGUCGUCAUCAUGAUGCAUGGCACCCAGCACUAUCUUCCUUGGGUUAAGCCCAACUGCACCCCU_UUCACCACCCACAUUUGCCC ...((((((...(((((((....))))))).))))))................((((.....))))................................ (-18.38 = -18.58 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:28:38 2006