Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,012,408 – 12,012,515 |
Length | 107 |
Max. P | 0.849409 |
Location | 12,012,408 – 12,012,515 |
---|---|
Length | 107 |
Sequences | 3 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 79.55 |
Mean single sequence MFE | -27.60 |
Consensus MFE | -25.92 |
Energy contribution | -24.93 |
Covariance contribution | -0.99 |
Combinations/Pair | 1.21 |
Mean z-score | -0.35 |
Structure conservation index | 0.94 |
SVM decision value | 0.78 |
SVM RNA-class probability | 0.849409 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12012408 107 + 22224390 CCUCUACAUCAACGUCCUCGAAGUCAUCCCACUCUAGAUCCGAAUCGAUGGCUUUGACCGCACUCAGCAAUAGCAAACUGCUGGCGAAGAGCAUCGACAGUGUUGCG ......((.((..(((.(((((((((((....((.......))...)))))))))))..((.((..((..((((.....))))))..)).))...)))..)).)).. ( -25.70) >DroSec_CAF1 45919 94 + 1 -------------AUCCUCAAAGUCGUCAUAUUCCGGGCUCGAAUCGGUGACUUUGACCGCACUCAGCAACAGCAAACUGCUGGCGAGGAGCAUUGACAGCGUUGCG -------------.(((((...((.((((....((((.......))))......)))).)).....((..((((.....)))))))))))(((.((....)).))). ( -26.70) >DroSim_CAF1 45124 94 + 1 -------------AUCCUCGAAGUCGUCCCAUUCCCGGCCCGAAUCGGUGACUUUGAACGCACUCAGCAACAGCAAACUGCUGGCGAGGAGCAUCGACAGCGUUGCG -------------.((((((((((((.((.((((.......)))).))))))))))).(((...(((((.........)))))))).)))(((.((....)).))). ( -30.40) >consensus _____________AUCCUCGAAGUCGUCCCAUUCCAGGCCCGAAUCGGUGACUUUGACCGCACUCAGCAACAGCAAACUGCUGGCGAGGAGCAUCGACAGCGUUGCG .................(((((((((((..((((.......)))).)))))))))))..((.....))....((((...((((.(((......))).)))).)))). (-25.92 = -24.93 + -0.99)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:28:38 2006