Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,008,396 – 12,008,500 |
Length | 104 |
Max. P | 0.500000 |
Location | 12,008,396 – 12,008,500 |
---|---|
Length | 104 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 77.33 |
Mean single sequence MFE | -26.53 |
Consensus MFE | -17.79 |
Energy contribution | -17.80 |
Covariance contribution | 0.01 |
Combinations/Pair | 1.11 |
Mean z-score | -1.39 |
Structure conservation index | 0.67 |
SVM decision value | -0.06 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12008396 104 + 22224390 -------------UGUUAUCAUUAAUUUUCGGAUAUACAUAUGUCGGGCGAUAUUAAUUGCCCAGGGCUGAAGAUUAUCGAAUAUUCUGAUAUUGAGAUUGAGGGCGACUGCG---AAAU -------------.((..(((.((((((((((((((....)))))(((((((....))))))).....)))))))))((.(((((....)))))))...)))..)).......---.... ( -23.70) >DroSec_CAF1 41906 107 + 1 -------------UGUUAUCAUUAAUAUUCGGAUAUACAUAUGUCGGGCGAUAUUAAUUGCCCAGGGCUGAAGAUUAUCGAAUAUUAUGAUAUUGAGUUUGAGGGAAAUUAUUAUUGAGA -------------...((((((.(((((((((((((....)))))(((((((....)))))))...............))))))))))))))............................ ( -25.90) >DroYak_CAF1 41591 117 + 1 UGCUAUUUGCUAUUGCUAUCAUUAAUUUUCGGUUAUACAUAUGUCGGGCGAUAUUAAUUGCCUAGGGCUGAAGAUUAUCGAACACUCUGAUAGGAAGAUUGAAGGCGACGGGG---AAUU ....((((.(..(((((.((..((((((((((((..((....)).(((((((....)))))))..))))))))))))..)).((.(((.......))).))..)))))..).)---))). ( -30.00) >consensus _____________UGUUAUCAUUAAUUUUCGGAUAUACAUAUGUCGGGCGAUAUUAAUUGCCCAGGGCUGAAGAUUAUCGAAUAUUCUGAUAUUGAGAUUGAGGGCGACUGCG___AAAU .............(((..(((.((((((((((....((....)).(((((((....)))))))....))))))))))(((.......))).........)))..)))............. (-17.79 = -17.80 + 0.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:28:31 2006