Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,000,910 – 12,001,027 |
Length | 117 |
Max. P | 0.559565 |
Location | 12,000,910 – 12,001,027 |
---|---|
Length | 117 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 89.50 |
Mean single sequence MFE | -23.52 |
Consensus MFE | -16.41 |
Energy contribution | -16.48 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.04 |
Mean z-score | -1.76 |
Structure conservation index | 0.70 |
SVM decision value | 0.05 |
SVM RNA-class probability | 0.559565 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12000910 117 + 22224390 ACAUAAGCACACAUCCUUUUGUGCUGAAC---CACAAUUCUUUUACAGCGCAAGCAAUUAUUUAGAUUAAACAAACUAAGUCUAGAGAUAAGCAGCUCAAUGAUUUUCCCACACUUUGGG .(((.(((..........((((((((...---.............))))))))((.....((((((((..........)))))))).....)).)))..))).....((((.....)))) ( -23.39) >DroSec_CAF1 39781 118 + 1 ACAUAAGCACACAUCCUUUUGUGCUUAAC--CCACAAUUCUUUAACAGAGCAAGCAAUUAUUUAGAUUAAACAAACUAAGUCUAGAGAUAAGCAGCUCAAUGAUUUUCCCACACUUUGGG ...((((((((........))))))))..--................((((..((.....((((((((..........)))))))).....)).)))).........((((.....)))) ( -25.10) >DroEre_CAF1 38459 112 + 1 AC--------ACAGCCUUUUGUGCAGAACAACCACAAUUCUUUUACAGAGCCAGCAAUUAUUUAGAUUAAGCAAACUAAGUCUGGAGAUAAGCAGCUCAAUGAUUUUCCCACACUUUGGG .(--------((((....)))))........................((((..((.....((((((((.((....)).)))))))).....)).)))).........((((.....)))) ( -20.10) >DroYak_CAF1 39454 117 + 1 ACACAAGAACACAGCCUUUUGUGCAGAA---CCACAAUUCUUUUAGAGAGCAAGCAAUUAUUUAGAUUCAACAAACUAAGUCUAGAGAUAAGCAGCUCAAUGGUUUUCCCACACUUUGGG .(((((((........))))))).((((---(((....((.....))((((..((.....((((((((..........)))))))).....)).))))..)))))))((((.....)))) ( -25.50) >consensus ACAUAAGCACACAGCCUUUUGUGCAGAAC__CCACAAUUCUUUUACAGAGCAAGCAAUUAUUUAGAUUAAACAAACUAAGUCUAGAGAUAAGCAGCUCAAUGAUUUUCCCACACUUUGGG ..................(((((.........)))))..........((((..((.....((((((((..........)))))))).....)).)))).........((((.....)))) (-16.41 = -16.48 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:28:30 2006