Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,996,779 – 11,996,898 |
Length | 119 |
Max. P | 0.817009 |
Location | 11,996,779 – 11,996,898 |
---|---|
Length | 119 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 95.98 |
Mean single sequence MFE | -29.64 |
Consensus MFE | -26.94 |
Energy contribution | -27.06 |
Covariance contribution | 0.12 |
Combinations/Pair | 1.09 |
Mean z-score | -1.33 |
Structure conservation index | 0.91 |
SVM decision value | 0.67 |
SVM RNA-class probability | 0.817009 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11996779 119 + 22224390 GGUUUUGGGAUAAAUGCAGAGACAAGUACAA-AAGCCGAAUGAGCAGGAUGCAAGGACAUGCUAGGCGUAAUAGGACACUUGCAUGCAUGGAAUCCGCAAACAUGCAGGAGCAACAAACG .(((((.((((..(((((..(.(((((....-..(((.....(((((..(....)..).)))).)))((......)))))))).)))))...))))(((....))).)))))........ ( -28.00) >DroSec_CAF1 35729 119 + 1 GGUUUUGGGUUAAAUGCAGAGACAAGUACAA-AAGCCGAAUGAGCAGGAUGCAAGGACAUGCUAGGCGUAAUAGGACACUUGCAUGCAUGGAAUCCGCAAACAUGCAGGAGCAACAAACA .((((((((((..(((((..(.(((((....-..(((.....(((((..(....)..).)))).)))((......)))))))).)))))..)))))).)))).(((....)))....... ( -30.40) >DroSim_CAF1 37168 119 + 1 GGUUUCGGGUUAAAUGCAGAGACAAGUACAA-AAGCCGAAUGAGCAGGAUGCAAGGACAUGCUAGGCGUAAUAGGACACUUGCAUGCAUGGAAUCCGCAAACAUGCAGGAGCAACAAACA .((((((((((..(((((..(.(((((....-..(((.....(((((..(....)..).)))).)))((......)))))))).)))))..)))))(((....))).)))))........ ( -32.90) >DroEre_CAF1 34601 119 + 1 GGUUUUGGGUUAAAUGCAGAGACAAGUACAA-AAGCCGAAUGGGCAGGAUGCAAGGACAUGCUAGGCGUAAUAGGACACUUGCAUGCAUGGAAUCCGCAAACAUGCAGGAGCAACAAACA .((((((((((..(((((..(.(((((....-..(((.....)))...((((..((.....))..))))........)))))).)))))..)))))).)))).(((....)))....... ( -30.90) >DroYak_CAF1 35728 120 + 1 GGUUUUGGGUUAAAUGCAGAGACAAGUACAAAAAGCCGAAUGAGCAGGAUGCAAUUACAUACUAGUCGUAAUAGGACACUUGCAUGUAUGGAAUCCGCAAACAUGCAGGAGCUACAAAGA ((((((..((....((......))...))..))))))...(((((((.(((......))).)).(((.......))).(((((((((.((.......)).))))))))).))).)).... ( -26.00) >consensus GGUUUUGGGUUAAAUGCAGAGACAAGUACAA_AAGCCGAAUGAGCAGGAUGCAAGGACAUGCUAGGCGUAAUAGGACACUUGCAUGCAUGGAAUCCGCAAACAUGCAGGAGCAACAAACA .((((((((((..(((((..(.(((((.......(((.....((((.............)))).)))((......)))))))).)))))..)))))(((....))).)))))........ (-26.94 = -27.06 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:28:27 2006