Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,342,123 – 1,342,235 |
Length | 112 |
Max. P | 0.670529 |
Location | 1,342,123 – 1,342,235 |
---|---|
Length | 112 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 89.06 |
Mean single sequence MFE | -36.28 |
Consensus MFE | -30.68 |
Energy contribution | -31.20 |
Covariance contribution | 0.52 |
Combinations/Pair | 1.14 |
Mean z-score | -1.43 |
Structure conservation index | 0.85 |
SVM decision value | 0.29 |
SVM RNA-class probability | 0.670529 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1342123 112 + 22224390 --------GAGAGUUUGCCAUAACUUUCACAUGCAGGAGUCACUCCAACGGGCGAAUUUCUCAUUUGCCUAUGCUCCUUGCCAGGAUGACGAGGAUAAUGGAGGAUAGUGGUGUGUUGGU --------(((((((......)))))))((((((....(((.(((((..((((((((.....))))))))....((((((.(.....).))))))...))))))))....)))))).... ( -36.70) >DroSec_CAF1 2632 112 + 1 --------GAGAGUUUGCCAUAACUUUCACAUGCAGGAGUCACUCCAACGGGUGAAUUUCUCAUUUGCCUAUUCUCCUUGCCAGGAUGACUAGGAUAAUGGAGGAUAGUGGUGUGUGGGU --------(((((((......)))))))(((((((((((((((((....))))).))))))......(((((((((((((((((.....)).)).))).))))))))).))))))).... ( -36.20) >DroSim_CAF1 5843 112 + 1 --------GAGAGUUUGCCAUGACUUUCACAUGCAGGAGUCACUCCAACGGGUGAAUUUCUCAUUUGCCUAUUCUCCUUGCCAGGAUGACUAGGAUAAUGGAGGAUAGUGGUGUGUGGGU --------(((((((......)))))))(((((((((((((((((....))))).))))))......(((((((((((((((((.....)).)).))).))))))))).))))))).... ( -36.60) >DroEre_CAF1 2637 110 + 1 --------GAGAGUUUGCCAUAACUUUCACAUGCAGGAGUCGCUCCAGCAAGCGAAAUUCUCAUUUGCCUUUGCUCCUUGCCAGGAUGACGAGGAUAAUGGAGGAUAGUCGUGUGUGG-- --------(((((((......))))))).((((((.(((((.((((((((((((((.......)))))..))))((((((.(.....).))))))...))))))))..)).)))))).-- ( -37.40) >DroYak_CAF1 2848 120 + 1 AGCGUGGAGAGAGUUUGCCAUAACUUUCACAUGCAGAAGUUGCUCCAGCAAGCGAAGUUCUCAUUUGCCUUUGCUCCUCGCCAGGAUGACGAGGAUAAUGGAAGAUAGUGGUGUGUGGUU .(((((..(((((((......))))))).)))))....(((..(((((((((((((.......)))))..))))((((((.(.....).))))))...)))).))).............. ( -34.50) >consensus ________GAGAGUUUGCCAUAACUUUCACAUGCAGGAGUCACUCCAACGGGCGAAUUUCUCAUUUGCCUAUGCUCCUUGCCAGGAUGACGAGGAUAAUGGAGGAUAGUGGUGUGUGGGU ........(((((((......)))))))((((((....(((.(((((..((((((((.....))))))))....((((((.(.....).))))))...))))))))....)))))).... (-30.68 = -31.20 + 0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:00 2006