Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,993,881 – 11,994,001 |
Length | 120 |
Max. P | 0.539206 |
Location | 11,993,881 – 11,994,001 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 77.92 |
Mean single sequence MFE | -24.52 |
Consensus MFE | -12.81 |
Energy contribution | -16.30 |
Covariance contribution | 3.49 |
Combinations/Pair | 1.03 |
Mean z-score | -1.79 |
Structure conservation index | 0.52 |
SVM decision value | 0.01 |
SVM RNA-class probability | 0.539206 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11993881 120 - 22224390 AAAACAAGCAAACGUAUUGAUAGCGAUGCUGCCGAAAUUGCUGGCAAGCCAUUAGAGCCAACGCAAAAUGGUCAAUUAUCAACAGUAUCAGUGGAAAUUGGCCAAGCAUAAGUUUGGAAA ....(((((....((((((....))))))(((.....((((((((...........))))..))))..(((((((((.((.((.......)).))))))))))).)))...))))).... ( -30.40) >DroSec_CAF1 32987 114 - 1 AAAACAAGCAAACGUAUUGAUAGUCAUGCUGCCAAAAUUGCUGGCAAGCCAUUAGAG------CAAAAUGGUCAAUUAUCAACAGUAUCAGUGGAAAUUGGCCAAGCAUAAGUUUGGAAA ...........((...((((((((.....(((((.......))))).((((((....------...))))))..))))))))..)).(((((....)))))((((((....))))))... ( -26.00) >DroSim_CAF1 34237 120 - 1 NNNNNNNNNNNNNNNNUUGAUAGCCAUGCUGCCAAAAUUGCUGGCAAGCCAUUAGAGCCAACGCAAAAUGGUCAAUUAUCAACAGUAUCAGUGGAAAUUGGCCAAGCAUAAGUUUGGAAA ................((((((((((.((..........))))))..((((((...((....))..))))))....)))))).....(((((....)))))((((((....))))))... ( -26.90) >DroEre_CAF1 31816 119 - 1 AAAACAAGUAAACGUAUUGAUAGCCAUGCUGCCGAAUUUCUUGGCAAGCCAUUAGAGCCAACGCAA-AUGGUCAAUUAUCAACAGUAUCAGUGGAAAUUGGGCAAGCAUAAGUUUGAAAA ........(((((....((...(((((((((((((.....)))))..((((((...((....)).)-)))))...........)))))((((....)))))))...))...))))).... ( -25.30) >DroYak_CAF1 33032 93 - 1 AACACAA---------------------------AAACUACUAGCAUGCCAUUAGAACCAACGCAAAAUGGUCAAUUAUCAACAGUAUCAGUGAAAAUUGGGCUAGCAUAAGUUCAAAAA .......---------------------------.((((.(((((..((((((.............))))))...............(((((....))))))))))....))))...... ( -14.02) >consensus AAAACAAG_AAACGUAUUGAUAGCCAUGCUGCCAAAAUUGCUGGCAAGCCAUUAGAGCCAACGCAAAAUGGUCAAUUAUCAACAGUAUCAGUGGAAAUUGGCCAAGCAUAAGUUUGGAAA ................(((((((......(((((.......))))).((((((...((....))..))))))...))))))).....(((((....)))))((((((....))))))... (-12.81 = -16.30 + 3.49)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:28:20 2006