Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,993,440 – 11,993,556 |
Length | 116 |
Max. P | 0.698501 |
Location | 11,993,440 – 11,993,556 |
---|---|
Length | 116 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 81.83 |
Mean single sequence MFE | -29.24 |
Consensus MFE | -19.64 |
Energy contribution | -21.33 |
Covariance contribution | 1.69 |
Combinations/Pair | 1.04 |
Mean z-score | -1.86 |
Structure conservation index | 0.67 |
SVM decision value | 0.35 |
SVM RNA-class probability | 0.698501 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11993440 116 - 22224390 UUUAGCACACUUUUCCGCUGGAUUACCCAGCUUGACCCAGUUGAUCCUGGCUGGCAACAGAAAUAUUAACUUGAGCAAUUUAAUCCUUGCUCAUGCGAGUGUCCCCAUGUCAGCC----C .(((((..........(((((.....)))))........)))))....((((((((...(..(((((..(.(((((((........))))))).)..)))))..)..))))))))----. ( -31.97) >DroSec_CAF1 32583 116 - 1 UUUAGCAUACUUUUCCGCUGGAUUACCCAGCUUGACCCAGUUGAUCCUGGCUGGCAACAGAAAUAUUAACUUGAGCAAUUUAAUCCUUGCUCAUGCGAGUGUCCCCAUGUCAGCC----C .(((((..........(((((.....)))))........)))))....((((((((...(..(((((..(.(((((((........))))))).)..)))))..)..))))))))----. ( -31.97) >DroSim_CAF1 33846 116 - 1 UUUUGCAUACUUUUCCGCUGGAUUACCCAGCUUGACCCAGUUGAUCCUGGCUGGCAACAGAAAUAUUAACUUGAGCAAUUUAAUCCUUGCUCAUGCGAGUGUCCCCAUGUCAGCC----C ................(((((.....))))).................((((((((...(..(((((..(.(((((((........))))))).)..)))))..)..))))))))----. ( -31.90) >DroEre_CAF1 31435 120 - 1 UAUAGCAUACUUUUGCGCUGGAUUACACAGCUUGACCCAGUUGAUCCGGGCUGGCAACAGAAAUAUUAACUUGAGCAAUUUAAUCCUUGCUCAUGCGAGUGUCCCCAUGCCCCCCCCCCC ....(((......)))(((((...((((.((.......(((((((.....(((....)))....)))))))(((((((........))))))).))..))))..))).)).......... ( -31.30) >DroYak_CAF1 32561 114 - 1 UUUAGCAUACUUUUUCGCUGGAUUACCCAGCUUGACCCAGUUGAUCCUGGCUGGCAACAGAAAUAUUAACUUGAGCAAUUUAAUCCUUGCUCAUGCGAGUGUCCCCAUCGCCU------U ....((..........(((((.....)))))..(((.((((((((.....(((....)))....)))))))(((((((........))))))).....).)))......))..------. ( -29.80) >DroPer_CAF1 135126 93 - 1 -----------------------UAACGCCUUUGACCCAGUUGAUC-UGCCUUGUAACAGAAAUAUUAACUUAAGCGAUUUAAUCCUUGGGCAUGCGAGCAUCUCGUUCCCACC---GGU -----------------------....(((.(((....((((((((-((........))))....))))))....))).........((((...(((((...))))).))))..---))) ( -18.50) >consensus UUUAGCAUACUUUUCCGCUGGAUUACCCAGCUUGACCCAGUUGAUCCUGGCUGGCAACAGAAAUAUUAACUUGAGCAAUUUAAUCCUUGCUCAUGCGAGUGUCCCCAUGUCAGCC____C ................(((((.....)))))..(((.((((((((.....(((....)))....)))))))(((((((........))))))).....).)))................. (-19.64 = -21.33 + 1.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:28:19 2006