Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,992,112 – 11,992,227 |
Length | 115 |
Max. P | 0.988540 |
Location | 11,992,112 – 11,992,227 |
---|---|
Length | 115 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 84.46 |
Mean single sequence MFE | -23.31 |
Consensus MFE | -16.95 |
Energy contribution | -18.14 |
Covariance contribution | 1.19 |
Combinations/Pair | 1.11 |
Mean z-score | -3.00 |
Structure conservation index | 0.73 |
SVM decision value | 2.12 |
SVM RNA-class probability | 0.988540 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11992112 115 - 22224390 -----CAAAAAACUUAUUACAUUAAAUUUAAAGUUGGCAAGUAUCUAAAAAAAAAUAUGAAGUUGCUUGCCAACUUGUGCGAUAAAUUCAAAUGAAAUCCAGCUGAAAAAUGCUUUUCUU -----........((((..(((........(((((((((((((.((..............)).))))))))))))))))..))))........((((...(((........))))))).. ( -23.74) >DroSec_CAF1 31341 109 - 1 -----CAA-AAACUUAUUACAUUACAUUUAAAGUUGGCAAGUAUCUAAA---AAAUAUGAAGUUGCUUGCCAACUUGUGCGAUAAAUUCAAAUGAAAUCCAGCUGAAAAAUGCGUUU--U -----..(-((((.((((..((..(((...(((((((((((((.((...---........)).))))))))))))))))..))...((((..((.....))..)))).)))).))))--) ( -25.40) >DroSim_CAF1 32600 109 - 1 -----CAA-AAACUUAUUACAUUAAAUUUAAAGUUGGCAAGUAUCUAAA---AAAUAUGAAGUUGCUUGCCAACUUGUGCGAUAAAUUCAAAUGAAAUCCAGCUGAAAAAUGCGUUU--U -----..(-((((((((..(((........(((((((((((((.((...---........)).))))))))))))))))..)))).((((..((.....))..))))......))))--) ( -25.10) >DroYak_CAF1 31338 111 - 1 AGCAACAAAAAAGAUGUUACAUGAAAUUUAAAGUAGGCAAGCAUAUAAAAAAAAUU--GAAGUCGUGUAGCAACUUGUGCGAUAAAUUCAAAUGAAAUUCAGUUGAAAAAUG-------U .(((......(((.((((((((((..(((((.......................))--))).)))))))))).))).)))......(((((.((.....)).))))).....-------. ( -19.00) >consensus _____CAA_AAACUUAUUACAUUAAAUUUAAAGUUGGCAAGUAUCUAAA___AAAUAUGAAGUUGCUUGCCAACUUGUGCGAUAAAUUCAAAUGAAAUCCAGCUGAAAAAUGCGUUU__U .............((((..(((........(((((((((((((.((..............)).))))))))))))))))..)))).((((..((.....))..))))............. (-16.95 = -18.14 + 1.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:28:17 2006