Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,988,475 – 11,988,575 |
Length | 100 |
Max. P | 0.906876 |
Location | 11,988,475 – 11,988,575 |
---|---|
Length | 100 |
Sequences | 5 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 96.50 |
Mean single sequence MFE | -27.86 |
Consensus MFE | -27.24 |
Energy contribution | -27.28 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.04 |
Mean z-score | -1.30 |
Structure conservation index | 0.98 |
SVM decision value | 1.05 |
SVM RNA-class probability | 0.906876 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11988475 100 + 22224390 UGC-CCGCACGAACAUUAUCUAAAUUUUUAUGCGAAAACUUUGCUCGCCUUUUUCGAGUGUAGUGAAGUGCAAAAGGGAAACUCAGUUGGAGUUCGCUGCU------ ...-.((((..((.(((.....))).))..))))........(((((.......)))))((((((((.(.(((..((....))...))).).)))))))).------ ( -27.80) >DroSec_CAF1 27819 100 + 1 UGC-CCGCACGAACAUUAUCUAAAUUUUUAUGCGAAAACUUUGCUCGCCUUUUUCGAGUGUAGUGAAGUGCAAAAGGGAAACUCAGUUGGAGUUCGCUGCU------ ...-.((((..((.(((.....))).))..))))........(((((.......)))))((((((((.(.(((..((....))...))).).)))))))).------ ( -27.80) >DroSim_CAF1 29052 100 + 1 UGC-CCGCACGAACAUUAUCUAAAUUUUUAUGCGAAAACUUUGCUCGCCUUUUUCGAGUGUAGUGAAGUGCAAAAGGGAAACUCAGUUGGAGUUCGCUGCU------ ...-.((((..((.(((.....))).))..))))........(((((.......)))))((((((((.(.(((..((....))...))).).)))))))).------ ( -27.80) >DroEre_CAF1 26768 100 + 1 UGC-CCGCACGAACAUUAUCUAAAUUUUUAUGCGAAAACUUUGCGCGCCUUUUUCGAGUGUAGUGAAGUGCAAAAGGGAAACUCAGUUGGAGUUCGCUGCU------ ...-..((((((((....(((((.......(((....((((..((((((......).)))).)..)))))))...((....))...)))))))))).))).------ ( -23.90) >DroYak_CAF1 27901 107 + 1 UGCACCGCACGAACAUUAUCUAAAUUUUUAUGCGAAAACUUUGCUCGCCUUUUUCGAGUGUAGUGAAGUGCAAAAGGGAAACCCAGUUGGAGUUCGCUGCUGCGUUG .(((.((((..((.(((.....))).))..))))........(((((.......)))))((((((((.(.(((..((....))...))).).))))))))))).... ( -32.00) >consensus UGC_CCGCACGAACAUUAUCUAAAUUUUUAUGCGAAAACUUUGCUCGCCUUUUUCGAGUGUAGUGAAGUGCAAAAGGGAAACUCAGUUGGAGUUCGCUGCU______ .....((((..((.(((.....))).))..))))........(((((.......)))))((((((((.(.(((..((....))...))).).))))))))....... (-27.24 = -27.28 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:28:12 2006